PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G190800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 300aa    MW: 33405.2 Da    PI: 5.0314
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G190800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.84e-34161171100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqql 87 
                           aCaaCk++rr+C++dC+lapyfp+++++ f+ +h+lFG+sn+lk+l+++  ++++r++am+++vye++a+   P  G+v +i+ lqq++
  Sobic.008G190800.1.p  16 ACAACKYQRRRCVADCPLAPYFPHDRSRVFRSAHRLFGVSNILKTLERAgpDPDRRHEAMQCVVYESQAWDLYPSAGCVPIIHGLQQRI 104
                           7***********************************************97667779********************************* PP

                DUF260  88 eqlkaelallkee 100
                           +q+++el +++++
  Sobic.008G190800.1.p 105 HQVENELRRVRAH 117
                           *******999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.22415118IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-3316115IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEAAGGGGGP PPAVTACAAC KYQRRRCVAD CPLAPYFPHD RSRVFRSAHR LFGVSNILKT  60
LERAGPDPDR RHEAMQCVVY ESQAWDLYPS AGCVPIIHGL QQRIHQVENE LRRVRAHLQA  120
YQQPQPRDIV DDAAAGVRYS SMPPSSPPPF QLQWTAAAMG EDDEGIAAAA AAAARDDERQ  180
MMINDNAVTS DDDGNNMPPP PPPHTTLRWT LQPPQYEHPF FVNETSMLPQ FQFHYQHHQP  240
VVAVSTQLPE LQEDDMTMVN YFADDDGINN GENDEMPRRQ SSTDSSGEKA MWIKMKDNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-1861217114LOB family transfactor Ramosa2.1
5ly0_B2e-1861217114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G190800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703067e-41HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443664.20.0LOB domain-containing protein 14
TrEMBLA0A1Z5R7I50.0A0A1Z5R7I5_SORBI; Uncharacterized protein
STRINGSb08g023100.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154591316
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.17e-30LOB domain-containing protein 27