PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G148900.5.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 736aa    MW: 83420.8 Da    PI: 8.0381
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G148900.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-15361191099
                           HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                           v+  + + lpkk ++++ g+   +  ++l+  +g+++++++  +k +++ v+++GW +F++a +L++gD++vF+++++  f  +v++f+
  Sobic.008G148900.5.p  36 VMIGDYVALPKKITNNIRGQ--IQEVVKLQVADGKTYDIQI--DKEPNGLVFGSGWAKFASAYELEQGDMLVFRYSRNCLF--KVQIFD 118
                           55567789*****9888777..4558***************..********************************998888..999998 PP

                           S CS
                    B3  99 k 99 
                            
  Sobic.008G148900.5.p 119 P 119
                           5 PP
2B348.31.8e-15176261899
                           -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                    B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                            d++ ++ l+l  k+a++ g +   s t+tl+ ++g+++++++  +kk ++ +l  GW  F++a +L++gD++vF+++g+s f   v++
  Sobic.008G148900.5.p 176 LDSGFKNGLILREKYAKNVGDQ--ISETITLKVLDGETYDIEV--TKKNNELLLCFGWVAFANAYELEQGDTLVFRYSGESHF--EVQI 258
                           57777788********777766..7889***************..**********************************9999..9999 PP

                           E-S CS
                    B3  97 frk 99 
                           f+ 
  Sobic.008G148900.5.p 259 FSP 261
                           875 PP
3B367.91.5e-21324415199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f+k++++++ +k++ l++pkkfa++ gg+   + +++le ++g++++vk+   k ++  v+++GW +F ++++L++gD +vF+++g   
  Sobic.008G148900.5.p 324 FIKIMISASDFKNK-LTIPKKFATNVGGQ--IPEEVQLEAPNGKTYNVKV--AKEQNDLVIGTGWTKFSSSHDLRQGDLLVFTYSGYAH 407
                           89*********998.********999988..6669***************..********************************99777 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           f  +v++f+ 
  Sobic.008G148900.5.p 408 F--KVRIFDP 415
                           8..9999986 PP
4B341.72.1e-13536617991
                           HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                    B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                            + +sg+l ++k++a +h ++k++  t+tl +++g ++W ++l   ++ g+y  ++GW +F   ngLkegD+++F+ ++  s+ +
  Sobic.008G148900.5.p 536 TSVSSGILAISKDYAVKHLLDKNG--TITLSQLNGsKTWAITLD-INTVGWYARSTGWLDFICNNGLKEGDICIFEPSKGkSRVT 617
                           5678899***********888766..8999998888*******3.4445569999*********************765524333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-1926122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-1827122IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.19427120IPR003340B3 DNA binding domain
SMARTSM010193.2E-733120IPR003340B3 DNA binding domain
PfamPF023624.1E-1335118IPR003340B3 DNA binding domain
CDDcd100171.77E-1535118No hitNo description
SuperFamilySSF1019362.94E-18166264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-19167264IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.182169262IPR003340B3 DNA binding domain
CDDcd100171.07E-15172260No hitNo description
SMARTSM010192.4E-13172262IPR003340B3 DNA binding domain
PfamPF023621.1E-12176260IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-23317418IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-23318418IPR015300DNA-binding pseudobarrel domain
CDDcd100174.25E-22322414No hitNo description
PROSITE profilePS5086314.015323416IPR003340B3 DNA binding domain
PfamPF023628.6E-19324414IPR003340B3 DNA binding domain
SMARTSM010191.2E-17324416IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-15521620IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-15523620IPR015300DNA-binding pseudobarrel domain
CDDcd100178.77E-12527615No hitNo description
PROSITE profilePS5086311.35528624IPR003340B3 DNA binding domain
SMARTSM010196.8E-9530624IPR003340B3 DNA binding domain
PfamPF023621.6E-10535620IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MEKPQRMSTY LTRCKDCIVH HYWNHMDDQE KSFLSVMIGD YVALPKKITN NIRGQIQEVV  60
KLQVADGKTY DIQIDKEPNG LVFGSGWAKF ASAYELEQGD MLVFRYSRNC LFKVQIFDPN  120
GCEKEFSCFK VNSSSSVEGR CGHGMSKASY NTICKERAAH HYWNQMHNKC SFVVMLDSGF  180
KNGLILREKY AKNVGDQISE TITLKVLDGE TYDIEVTKKN NELLLCFGWV AFANAYELEQ  240
GDTLVFRYSG ESHFEVQIFS PSTCEKELSC FLTNSIPCVQ ERITSHDNHL QSPGSERRNK  300
ACTVCKNCIS NHYWHHMSDQ DRCFIKIMIS ASDFKNKLTI PKKFATNVGG QIPEEVQLEA  360
PNGKTYNVKV AKEQNDLVIG TGWTKFSSSH DLRQGDLLVF TYSGYAHFKV RIFDPSNCEK  420
EFSCVVMDNF PYGQERSISH DNHTQPSTSN MLVKHCSGSS SHKRKTLKTS PTDSPSRKST  480
EDDDVKEPLN SVGFQKSWLV FPMGCNMNSE QRAKIDALEQ KIRPQIPLYI TTMDMTSVSS  540
GILAISKDYA VKHLLDKNGT ITLSQLNGSK TWAITLDINT VGWYARSTGW LDFICNNGLK  600
EGDICIFEPS KGKSRVTLIF HPLEETHHPK SAGYVPSSRS PPHEATEPGY IVPRFTVLNN  660
EQMYKIKNKV QAIGSPYSVF VRIMKPGDVT PNNCIMRFCS AYDKKYLQRG QDTMSLIYPN  720
KTHTWEAEIK ISNNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G148900.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616590.0AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ2QMT61e-146Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A1Z5R7B70.0A0A1Z5R7B7_SORBI; Uncharacterized protein
STRINGSb08g019887.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-28B3 family protein