PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G144500.1.p
Common NameSb08g019490, SORBIDRAFT_08g019490
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 291aa    MW: 30074.5 Da    PI: 6.9012
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G144500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004127149123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C+ Cgk+F++   L  H  +H
  Sobic.008G144500.1.p 127 HACSVCGKVFPTYQALGGHKASH 149
                           67***********9999998887 PP
2zf-C2H215.35.9e-05199221123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ Cgk F++   L  H r+H
  Sobic.008G144500.1.p 199 HECNVCGKAFPTGQALGGHKRRH 221
                           78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64127154IPR007087Zinc finger, C2H2
SMARTSM003550.023127149IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-13127151IPR007087Zinc finger, C2H2
SuperFamilySSF576675.3E-9127149No hitNo description
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
SuperFamilySSF576675.3E-9194221No hitNo description
PfamPF139121.0E-12198223IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.45199221IPR007087Zinc finger, C2H2
SMARTSM003550.033199221IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4199221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAVEAVLDAA AAVMPSPAPP RGRGDDVVVV VGGAAAAADD QVATTSGGGG TAAEEEEDVN  60
AVVQQEEHGH QGLAKRKKRS RRRRDREQQQ PPTPTQTQEE YLAQCLVMLA TGRRDRDVPA  120
PAPPQDHACS VCGKVFPTYQ ALGGHKASHR TKPSPAPTTP GVGDGDHHHD EEEKKPPVLP  180
SSSSAGSADT KPAAPAATHE CNVCGKAFPT GQALGGHKRR HYDGTIGSAA APARASSSSA  240
ATSSRNTAPP PAVAFDLNLP ALPERCAVAE DDEVLSPLAF KKPRFMIIPA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17584RKKRSRRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.87310.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During germination, abundant up to fourteen hours after imbibition. Levels decrease slightly after this and then gradually increase again. {ECO:0000269|PubMed:8223628}.
UniprotTISSUE SPECIFICITY: Highest levels in the root apex of wheat seedlings, lowest levels in leaf proximal region. {ECO:0000269|PubMed:8223628}.
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G144500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557421e-57EU955742.1 Zea mays clone 1544525 zinc-finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442402.10.0zinc finger protein 1
SwissprotQ424305e-41ZFP1_WHEAT; Zinc finger protein 1
TrEMBLC5YQH90.0C5YQH9_SORBI; Uncharacterized protein
STRINGSb08g019490.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.14e-30salt tolerance zinc finger