PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G112500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 589aa    MW: 62084.8 Da    PI: 6.3468
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G112500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-06220241526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C+ f ++  C++Gd C +aHg
  Sobic.008G112500.1.p 220 PCPEFKKGAGCRRGDMCEYAHG 241
                           8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.1E-1052139IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.51E-952135IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029711.454125IPR020683Ankyrin repeat-containing domain
CDDcd002041.51E-756130No hitNo description
PROSITE profilePS500889.13790125IPR002110Ankyrin repeat
SMARTSM003569.8E-4215242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4218242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258220243IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.925251275IPR000571Zinc finger, CCCH-type
SMARTSM0035687251274IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MTEPSDAAAA AAVSARLLEV AADDDSAALG DLIAAHPSLA DEPAPWYSPA RGAEPMTPLM  60
VAAAYGSVAC IDVLLSPPHL ADPNRASPSS LSTALHLAAG GGASTAPAAV SRLLAAGADP  120
TLLDHLHRRP SDLVALPPNS LPLKNHLLSL LGGRKEWPPD PSLPDIKNGA YASDDFRMYS  180
FKVRACSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFKKGAGC RRGDMCEYAH  240
GVFESWLHPA QYRTRLCKDG VGCARRVCFF AHTPEELRPL YVSSAGSQRS AMEMAAAMGM  300
GLPSPGASFT PPLSPSGGGS GVAGAWPQPN VPALCLPGSA GNLHLSRLRT SLSARSRAVD  360
ELLASADYDG LIGSPASVRS ARGKTLVPSN LDDLFSAEMA GSAASHSPRY GDQGGAAFSP  420
TRKAAMLNQF QQQQSLLSPR ATVIPEPVSP MSSRLLAALA QREKMQQQTL RSMSSRDLGS  480
GASVLVGSPV TSSWSKWGIP SSTPDWGADD DEIGRLKRSS SFELRNGANG DEPDLSWVNT  540
LVKEPTPEKP SIASLSQATS HEDIGGEDDT AGVIGGWLEQ LQLDEMVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G112500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0604750.0BT060475.1 Zea mays full-length cDNA clone ZM_BFb0004D03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302396.10.0zinc finger CCCH domain-containing protein 67
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLA0A1B6PDG20.0A0A1B6PDG2_SORBI; Uncharacterized protein
STRINGGRMZM2G027298_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-131CCCH-type zinc finger protein with ARM repeat domain