PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G088842.1.p | ||||||||
Common Name | SORBI_K001900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 1419aa MW: 157851 Da PI: 7.3835 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00024 | 1299 | 1322 | 1 | 22 |
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 ++C C++sFs++++L H r Sobic.008G088842.1.p 1299 FSCDieGCDMSFSTQHDLSLHKRD 1322 899999***************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 6.3E-18 | 17 | 58 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 14.617 | 18 | 59 | IPR003349 | JmjN domain |
Pfam | PF02375 | 1.2E-14 | 19 | 52 | IPR003349 | JmjN domain |
SuperFamily | SSF51197 | 1.22E-25 | 116 | 381 | No hit | No description |
SMART | SM00558 | 1.1E-44 | 195 | 364 | IPR003347 | JmjC domain |
PROSITE profile | PS51184 | 35.282 | 195 | 364 | IPR003347 | JmjC domain |
Pfam | PF02373 | 6.0E-36 | 228 | 347 | IPR003347 | JmjC domain |
SMART | SM00355 | 11 | 1299 | 1321 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.887 | 1322 | 1351 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 15 | 1322 | 1346 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1324 | 1346 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.3E-10 | 1349 | 1376 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.344 | 1352 | 1381 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0015 | 1352 | 1376 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1354 | 1376 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.55E-9 | 1362 | 1406 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.0E-9 | 1377 | 1405 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.284 | 1382 | 1413 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.1 | 1382 | 1408 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1384 | 1408 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1419 aa Download sequence Send to blast |
MPPPAVETPE WLRNLPVAPE FRPTAAEFAD PIAYILKIEA EASRYGICKI VPPLAPPPRE 60 ATVERLKASF AANAASTAAG DVAAPAPTFP TRLQQVGFSA KNRRPASRRV WESGERYTLE 120 AFRAKARDIE IPRHAVPPKH ATQLQLEALF WGACAGKPFN VEYGNDMPGS GFAAPEELNL 180 DLEGAGGNAA LAARDVGETE WNMRLAPRAR GSLLQAMGRD VAGVTTPMLY VAMLYSWFAW 240 HVEDHELHSL NYLHFGKSKT WYGVPRDAML AFEDAVRVHG YADDLNAIMA FQILNEKTTV 300 LSPEVLLSAG VPCCRLVQNP GEFVITFPGA YHSGFSHGFN CGEATNIATP CWLQVAKEAA 360 IRRASTNSGP MVSHYQLLYQ LALSLHLREP KNSHMPRSSR LRDKKNEGER MIKEAFVGSV 420 IENNSFLSIL LDKSSCVIIP EIEFPLPSRA PEVTDKQGLI AGPCSISQQK AEEVYGDEID 480 EIEEAENMSE STTSSACSQR KFYETKFGTV NSTAFCLSTS DIKIGVIGKG RSHQEGGLLD 540 QGRLPCVQCG ILSYACVAII QPKEAAVQYV ISRECMSSSA IHREIMESDD TSNRMAIAHQ 600 QGYACETDDN TRQNVSAAQV SGRCRQLYSS STHGCTSALG LLASAYESSD SDEEAEVPNN 660 ISNNCENNDV ANGVPNIQSS GTSVQDPNTN LHLYEEENDS RVIASLMQPV EEKCIAMTPV 720 SMETNMIHLA DQGESLTSHE QWHAYLDFDD DLTASGVKAS PKTSLSTAKG AMETDALTLF 780 KYSKDSCRMH VFCLEHALET WTRLEQIGGA NIMLLCNSEY PRAEAAAKVI AEELGMKHAW 840 KDITFKKATS EDTGRIQLAL QDEDAEPTSS DWAVKMGINI YYSAKQSKSP LYSKQVPYNP 900 IIYKAFAQEN PDSFTDEEGQ RSGTTKKKVA GWWCGKNWMS TQVHPLLARE QVEQNHETVY 960 SKAIFSASSC DRMQEQSTRS TTLISRSSSK KISRRKEGDS VEKSRGKKKR NSASACDEAA 1020 LQYTVYDQPV DFDNHAKYED GDESEGVDAQ NTRQHQQHES RNKKSSSKRR KGNNRSNSFY 1080 ELHKDNGDID CRFVTDSTEN TSIGDWDNSP PQWCDVIAVK SSARLQGSKR FSKEKASDGL 1140 SNVNKKLLKM GKKMSNKKQK NDKTNKQFQE NRKKADIVDL LRDEDDGDEA TYTKWNEIPK 1200 QKTDDVRVKS RGKMQSGKKK VSKCQANDDL HNGGKEAKFS SDIEVCNRRD GTAVDNWEEI 1260 PKEKADEVKV KPKMHSGKKK TSKHQASDGL HDADKGAKFS CDIEGCDMSF STQHDLSLHK 1320 RDICPVKGCK KKFFCHKYLL QHRKVHLDER PLMCSFPGCK KTFKWPWART EHMRVHTGVR 1380 PYACTEPGCT QTFRFVSDFS RHKRKTGHSC DKKKKNGT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 4e-72 | 10 | 417 | 7 | 380 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 4e-72 | 10 | 417 | 7 | 380 | Arabidopsis JMJ13 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 993 | 1009 | RRKEGDSVEKSRGKKKR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and flag leaves. Expressed at low levels in roots, shoots, stems and panicles. {ECO:0000269|PubMed:24280387}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G088842.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU946683 | 0.0 | EU946683.1 Zea mays clone 322288 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021301716.1 | 0.0 | lysine-specific demethylase JMJ705 | ||||
Swissprot | Q5N712 | 1e-165 | JM705_ORYSJ; Lysine-specific demethylase JMJ705 | ||||
TrEMBL | A0A109NDP3 | 0.0 | A0A109NDP3_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G431157_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6718 | 30 | 35 | Representative plant | OGRP14759 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 1e-150 | relative of early flowering 6 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G088842.1.p |
Publications ? help Back to Top | |||
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