PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G083200.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 386aa    MW: 40845.6 Da    PI: 7.4298
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G083200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.41.2e-21288350163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++++++L++eN +L++e+++++ke+++l s++
  Sobic.008G083200.1.p 288 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRADVLKQENASLRDEVNRIRKEYEELLSKN 350
                           89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.0E-29198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.6E-35137261No hitNo description
Gene3DG3DSA:1.20.5.1703.5E-17282347No hitNo description
SMARTSM003385.7E-21288352IPR004827Basic-leucine zipper domain
PfamPF001701.4E-20288350IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.346290353IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.81E-11291347No hitNo description
CDDcd147024.85E-24293343No hitNo description
PROSITE patternPS000360295310IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGSSGADTPS KTTKASAPQE QQPPATSGAA TPAVYPDWSS FQAYPPIPPH GFFPSPVASS  60
PQGHPYMWGA QPMIPPYGTP PPPYVMYPPG VYAHPSMPPG AHPFTPYAIT SPNGNADATG  120
TTAAAGDTDG KPSEGKDKSP TKRSKGSLGS LNMLTGKNTG EHGKTSGASA NGATSQSGES  180
GSDSSSEGSE ENSHNDSHHK ESGQEQDGDV RSSQNGASRS PSEGKLNQAM TIVPMPSSGP  240
VTGPTTNLNI GMDYWANTAS SAPAIHGKVT PTTVPGAVVP AEQWIQDERE LKRQRRKQSN  300
RESARRSRLR KQAECEELAQ RADVLKQENA SLRDEVNRIR KEYEELLSKN NSLKEKLEGK  360
QHKTDEAGLN NKLQHSGDDS QKKGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304310RRSRLRK
2304311RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.61061e-179leaf| pollen
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems and leaves. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G083200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0347690.0BT034769.2 Zea mays full-length cDNA clone ZM_BFb0017D08 mRNA, complete cds.
GenBankBT0606890.0BT060689.1 Zea mays full-length cDNA clone ZM_BFb0034I13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301985.10.0bZIP transcription factor 68-like
RefseqXP_021301986.10.0bZIP transcription factor 68-like
SwissprotB6E1070.0BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLA0A1B6PCH30.0A0A1B6PCH3_SORBI; Uncharacterized protein
STRINGSb08g008300.20.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.15e-78basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]