PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G063400.1.p | ||||||||
Common Name | Sb08g005290, SORBIDRAFT_08g005290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 28116.6 Da PI: 11.0919 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.4e-16 | 11 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed++l ++v ++G+ +W++Ia+ + gR++k+c++rw++ Sobic.008G063400.1.p 11 RGHWRPGEDDKLRQLVDKYGPQNWNSIAENLE-GRSGKSCRLRWFNQ 56 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.7e-17 | 63 | 106 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+ E+ell++a++ +G++ W++I+r ++ gRt++ +k++w+ Sobic.008G063400.1.p 63 RRPFTAAEEELLLQAHRAHGNR-WALISRFFP-GRTDNAVKNHWHV 106 679*******************.*********.***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.579 | 6 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-29 | 9 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-13 | 10 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-16 | 11 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 12 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.64E-13 | 14 | 55 | No hit | No description |
PROSITE profile | PS51294 | 24.204 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-15 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 63 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.40E-13 | 65 | 105 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-20 | 65 | 110 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEKSSRVRPS RGHWRPGEDD KLRQLVDKYG PQNWNSIAEN LEGRSGKSCR LRWFNQLDPR 60 INRRPFTAAE EELLLQAHRA HGNRWALISR FFPGRTDNAV KNHWHVVTAR RRRGHHHHHR 120 TLVGDGEQTA TSTGYVAVVP PRHQPPFHHQ YFHFGSCCLP ATTTKMTTTR SLCFAVPAGS 180 GPLGLSSSRA GTYGVVRNCN VPTAAAAVAL LDGHRRHDMS KDHGRRGGDD GGAGAVANRK 240 DVQFFDFLGV GI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 11 | 111 | 7 | 107 | B-MYB |
1gv2_A | 1e-30 | 11 | 111 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-30 | 11 | 111 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-30 | 11 | 111 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G063400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972498 | 1e-143 | EU972498.1 Zea mays clone 382267 myb-like DNA-binding domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002441942.1 | 0.0 | transcription factor MYB23 | ||||
TrEMBL | C5YT87 | 0.0 | C5YT87_SORBI; Uncharacterized protein | ||||
STRING | Sb08g005290.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 4e-57 | myb domain protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G063400.1.p |
Entrez Gene | 8054118 |