PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G061601.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 671aa    MW: 72292.2 Da    PI: 6.1313
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G061601.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-10371417447
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                           W   E+e l ++v+q+G+g+Wk I +  +    gRt+ ++k++w++ 
  Sobic.008G061601.1.p 371 WCLLEEETLRQGVEQYGSGNWKDILNNNPdvfIGRTPVDLKDKWRNM 417
                           55669****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-13362419IPR009057Homeodomain-like
PROSITE profilePS5129414.662363422IPR017930Myb domain
SuperFamilySSF466892.03E-15365440IPR009057Homeodomain-like
SMARTSM007173.7E-7367420IPR001005SANT/Myb domain
CDDcd116605.21E-18370419No hitNo description
PfamPF002496.5E-9370417IPR001005SANT/Myb domain
PfamPF012662.5E-9475648IPR006076FAD dependent oxidoreductase
Gene3DG3DSA:3.30.9.104.5E-7476597No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MPRVTPLGAS LILEHVLADP SVPAAVVTKL LVALPFPSHP TPRLRRAVLL HHLAADPVSE  60
SSLDTLQLLA ALPAPASPIA AAHIAVAAYL AVSASDFDVA VGALFARPNG RARLAVDEGG  120
SSALASDEVM TTVDQFEAAV GNSFSQAVLR GLWGDRSATE ERVRDLLAAE WAAIGPSLLV  180
QAAERIVGDG AVETWRAADE ATRAKLRILA GEERTHEILR KLEEPTSSAN PISTPAVEKV  240
INSLKTSCAE LHSVVEDPLP AAKAVADEVL AARMEKSVSL DAEEARGQPT TCGTAGPSAP  300
NDKGKGPSTG KPYSLMDWNP TARTFQWEES PGPESSEPSL RRPHLPSPRR APVSPLPPGE  360
NKNRRRRARK WCLLEEETLR QGVEQYGSGN WKDILNNNPD VFIGRTPVDL KDKWRNMINR  420
YRGIVRPPTT EKAADILLEA LFSACQNLAD EASSLPSEQK EFKLYKQHVD DLHHLAGNYD  480
SVIVCLGAKV RSLPELANKL PLRTCRGVIA EFKLPSDTVE EYGSQSPSIL SDAWLAFQGP  540
RSVSIGSTWQ WKSENDSSTV SDEESLTAME ELLPKASGVY PRINKWDFVG ARAGIRAMPP  600
LTANGSLPLL GCLDDLLGKK SNCTFWLVGG LGARGLLYHG LVGKLTAKAV ISCDENIIPS  660
EFTCWNTIKP *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.103670.0callus| embryo| ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G061601.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0650100.0BT065010.1 Zea mays full-length cDNA clone ZM_BFc0129D17 mRNA, complete cds.
GenBankEU9750570.0EU975057.1 Zea mays clone 466227 oxidoreductase mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301320.10.0uncharacterized protein LOC110429562
TrEMBLC5YT710.0C5YT71_SORBI; Uncharacterized protein
STRINGSi006005m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Representative plantOGRP15031424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.24e-12MYB_related family protein