PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G051400.4.p
Common NameSb08g004340, SORBIDRAFT_08g004340
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 442aa    MW: 47344 Da    PI: 10.7385
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G051400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.21.3e-14124155132
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                           C +Cg+  Tp+WR+gp g+ tLCnaCG++ + 
  Sobic.008G051400.4.p 124 CLQCGAAVTPQWRSGPMGQGTLCNACGVRLKA 155
                           89**************************9986 PP
2GATA52.47e-17266300135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C +Cg+++Tp+WR+gp g +tLCnaCG++yr  +l
  Sobic.008G051400.4.p 266 CLHCGSSSTPQWREGPLGRSTLCNACGVRYRQGRL 300
                           99*****************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.5E-11118175IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.231118173IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-12119169No hitNo description
Gene3DG3DSA:3.30.50.101.6E-12122160IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.1E-12124155IPR000679Zinc finger, GATA-type
CDDcd002029.85E-10124160No hitNo description
PROSITE patternPS003440124149IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.651260296IPR000679Zinc finger, GATA-type
SMARTSM004016.7E-14260310IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.52E-13261319No hitNo description
Gene3DG3DSA:3.30.50.101.3E-13264298IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.17E-13265321No hitNo description
PfamPF003201.2E-14266300IPR000679Zinc finger, GATA-type
PROSITE patternPS003440266291IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MATGDMAGGG GGEGESEGGP GYVLSLPAAW LPLPVAVSCL DATVRRKARS RLRLRAQPSG  60
WWAFKLPVVP APEEAKRPVP PASAVNNPTE AARPQRLRVR QAPVPDPYTP AAVEERPAKR  120
ARLCLQCGAA VTPQWRSGPM GQGTLCNACG VRLKAAGALR GQVQRRPTPA TARTPARPPP  180
PDSPVSESSP DSPIWEPGSV PDVYLVRKKP LKRGKPPPRP RTEPAPAPAP APAVYLVKKK  240
KKKKKAAASA DSSRKPWRPR KSAKQCLHCG SSSTPQWREG PLGRSTLCNA CGVRYRQGRL  300
LPEYRPIASP TFEPSEHANR HSQVLQLHRH RKSQSQSQSH HQQHPLPVEH HPPRAMDVLQ  360
FPPQRWHVKE EYPPTPVHQP LSLAGGVGGL MVDAAADADA GQGGDRGKGS DLNNAPSSLD  420
SLLLEGPSAP LLVDGDQPLI D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238244KKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.215350.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G051400.4.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302388.10.0BAG family molecular chaperone regulator 3 isoform X1
TrEMBLA0A1Z5R5Z90.0A0A1Z5R5Z9_SORBI; Uncharacterized protein
STRINGSb08g004340.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.15e-25GATA transcription factor 6