PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.008G047300.1.p

Common Name

Sb08g003990, SORBIDRAFT_08g003990

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Trihelix

Protein Properties

Length: 448aa MW: 50692.5 Da PI: 6.5405

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.008G047300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76	5.8e-24	120	216	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 +Wt+++v++Li+a ++ +e+ +++ +kk++W+++sk+m erg+ +sp+qC++k+++lnkryk+++++ +++ t++++ + Sobic.008G047300.1.p 120 KWTDSMVRLLITAASYAGEDPGADLgggrrscammQKKGKWKAISKVMGERGCLVSPQQCEDKFNDLNKRYKRLTDILGRGtTCRVVAN 208 7*****************998644445566778********************************************77999999 PP trihelix 79 cpyfdqle 86 ++d ++ Sobic.008G047300.1.p 209 PELLDGMT 216 99888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.4E-19	118	242	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MEGNNLPSGS LMQGAAYGNL DLHHHSHMQM PAPSSGNQAF NHSQMPANFP ICLNQVTDSD 60 QLPEFQFGEH GKVSHHHHHH HHQQHAKNSM SDDEEHGVHE DATDSQTSKG KKGSAWHRMK 120 WTDSMVRLLI TAASYAGEDP GADLGGGRRS CAMMQKKGKW KAISKVMGER GCLVSPQQCE 180 DKFNDLNKRY KRLTDILGRG TTCRVVANPE LLDGMTNLSD KMKDDARKIL SSKHLFYEEM 240 CSYHNNNRFS LPEDPALQRS LQLALKSKDE HDARKRASGD ADEDDQSADT DYEEENDDEH 300 PMVHVNKGTL PMHKRMRYMA ADMEDAGFGN SSSSHDCSRR SDPHSIAVDI NKAFPDGTNL 360 ALVQKDLATQ SAEIEKQRME IEVEALELAK QRLKWEIFSK KKDRELEKMR LENEQMKMEN 420 RRLELEVRDK ELELERKLQG SGSHAMT*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MEGNNLPSGS LMQGAAYGNL DLHHHSHMQM PAPSSGNQAF NHSQMPANFP ICLNQVTDSD  60
QLPEFQFGEH GKVSHHHHHH HHQQHAKNSM SDDEEHGVHE DATDSQTSKG KKGSAWHRMK  120
WTDSMVRLLI TAASYAGEDP GADLGGGRRS CAMMQKKGKW KAISKVMGER GCLVSPQQCE  180
DKFNDLNKRY KRLTDILGRG TTCRVVANPE LLDGMTNLSD KMKDDARKIL SSKHLFYEEM  240
CSYHNNNRFS LPEDPALQRS LQLALKSKDE HDARKRASGD ADEDDQSADT DYEEENDDEH  300
PMVHVNKGTL PMHKRMRYMA ADMEDAGFGN SSSSHDCSRR SDPHSIAVDI NKAFPDGTNL  360
ALVQKDLATQ SAEIEKQRME IEVEALELAK QRLKWEIFSK KKDRELEKMR LENEQMKMEN  420
RRLELEVRDK ELELERKLQG SGSHAMT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.008G047300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU952198	0.0	EU952198.1 Zea mays clone 1220044 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002441874.1	0.0	uncharacterized protein LOC8079857
Refseq	XP_021301648.1	0.0	uncharacterized protein LOC8079857
TrEMBL	C5YSA2	0.0	C5YSA2_SORBI; Uncharacterized protein
STRING	Sb08g003990.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86
Representative plant	OGRP2796	13	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-105	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Sobic.008G047300.1.p
Entrez Gene	8079857