PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G040600.1.p | ||||||||
Common Name | Sb08g003500, SORBIDRAFT_08g003500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 185aa MW: 20042.6 Da PI: 9.7878 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.8 | 7.3e-11 | 107 | 169 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 eke kr rr NRe+Ar +R++a +eL++kv+ L+++N+++kke + ke+ +lk + Sobic.008G040600.1.p 107 EKEEKRLRRVLANRESARQTILRRQAIRDELARKVADLSSQNETMKKEKDVVMKEYLSLKETN 169 7999*******************************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-5 | 105 | 171 | No hit | No description |
Pfam | PF00170 | 1.3E-9 | 107 | 169 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 2.9E-13 | 107 | 171 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.243 | 109 | 172 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.75E-7 | 111 | 167 | No hit | No description |
CDD | cd14702 | 4.56E-11 | 112 | 162 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MTDPMSDGGD GQQRRRQCRR GIVTPDVELG AALALADMAA GSSAVQMTDD EEMASTRLSL 60 QLGRVGVHQS PSCSSSSSAG RPSAAPGGSG AAAHHGPRPR HMLTEAEKEE KRLRRVLANR 120 ESARQTILRR QAIRDELARK VADLSSQNET MKKEKDVVMK EYLSLKETNE QLKAQAHHLS 180 LSLF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G040600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287905 | 4e-75 | AK287905.1 Oryza sativa Japonica Group cDNA, clone: J065211O07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002441853.1 | 1e-131 | G-box-binding factor 3 | ||||
TrEMBL | C5YS47 | 1e-130 | C5YS47_SORBI; Uncharacterized protein | ||||
STRING | Sb08g003500.1 | 1e-131 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3165 | 34 | 75 | Representative plant | OGRP4569 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19490.1 | 4e-17 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G040600.1.p |
Entrez Gene | 8079836 |