PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G223400.1.p
Common NameSb07g028870, SORBIDRAFT_07g028870
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 269aa    MW: 28195.4 Da    PI: 9.8349
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G223400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-057493221
                          EETTTTEEESSHHHHHHHHH CS
               zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                          +C+ Cgk F+++  L  H+r
  Sobic.007G223400.1.p 74 PCSECGKQFPSWKALFGHMR 93
                          6******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-77395No hitNo description
SMARTSM003550.00427395IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.86873100IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
PfamPF139122.3E-97597IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-47595IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.1E-7175202No hitNo description
PROSITE profilePS501579.473180207IPR007087Zinc finger, C2H2
SMARTSM003551.2180202IPR015880Zinc finger, C2H2-like
PfamPF139127.0E-11180204IPR007087Zinc finger, C2H2
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MATPIRLAGA PPARPPQPLS PPPHHDTTLT LSLALPPPPF VCAISPRPAP RPPDGVVVAR  60
VRSSSLTEDT PPSPCSECGK QFPSWKALFG HMRCHPERQW RGIKKPPHFR HQAVVAAAAD  120
LHFTEQERET ATSLLMLRQG EPAGKGKKSV LGASPPSAKA ICGASTSASL PPPSARCDDH  180
KCSVCARGFA TGQALGGHKR CHWEKTACVE GTIAVATSSA SPTSSSQAAP ATTLDLNLPP  240
PGMPPLPKKW KRDQGGSLDA TLDLKLGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G223400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751881e-105EU975188.1 Zea mays clone 483820 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444830.10.0zinc finger protein ZAT2
TrEMBLC5YJN30.0C5YJN3_SORBI; Uncharacterized protein
STRINGSb07g028870.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-30C2H2-like zinc finger protein