PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G217700.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 686aa    MW: 74524.9 Da    PI: 6.8882
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G217700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.5e-30277334159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgynWrKYG K+vk+se+prsYY+Ct+++Cpvkk vers  +++++ei+Y+g+H h+
  Sobic.007G217700.3.p 277 LDDGYNWRKYGEKQVKKSEHPRSYYKCTHPKCPVKKMVERSL-EGHITEIVYRGSHSHP 334
                           59****************************************.***************7 PP
2WRKY104.65.5e-33487545159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+++d k v++tYeg+Hnhe
  Sobic.007G217700.3.p 487 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYAGCSVRKHVERASNDLKSVITTYEGRHNHE 545
                           59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.263272336IPR003657WRKY domain
SuperFamilySSF1182901.22E-24274336IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-27275336IPR003657WRKY domain
SMARTSM007748.3E-34277335IPR003657WRKY domain
PfamPF031061.9E-23278334IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-36472547IPR003657WRKY domain
SuperFamilySSF1182901.18E-28479547IPR003657WRKY domain
PROSITE profilePS5081137.275482547IPR003657WRKY domain
SMARTSM007742.6E-37487546IPR003657WRKY domain
PfamPF031062.6E-25488545IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MEDWMLPSPS PRTLMPSFFN EEFSSAPFSN IFSDDRSNKP LDEIEKSKTF IGSSAQETSQ  60
DTKDHPQTES NLFSANQKST SPGGLAERMA ARAGFGVLKI DTSRVSSSGA PIRSPVTIPP  120
GVSPRELLES PVFLPNATSQ PSPTTGKLPF LMPNNFKSTM PSVPEKSEDH SHEDSAFSFQ  180
PILRSKPSTL WTAEKGSSVV HQTQSLTKDS QGLNVHANPT ATKHETEENL VKPKTCDSMF  240
DEQSEEIQNG EDSSAPDTGT ADDGYFLRVN RRGMPLLDDG YNWRKYGEKQ VKKSEHPRSY  300
YKCTHPKCPV KKMVERSLEG HITEIVYRGS HSHPLPLPNS RPSVPLSHFN DSEADGNFSS  360
KPGPGYDSST SQGIAPKGQF QDVHSGALET KLSGSLTTTE IADTSVMESM DVSSTLSSNE  420
KGDRAMNGAV PSTNDMNEDE TESKRRKMEV SVASNTANIV TDMAAMASRT AREPRIVVQT  480
TSEVDILDDG YRWRKYGQKV VKGNPNPRSY YKCTYAGCSV RKHVERASND LKSVITTYEG  540
RHNHEVPAAR NSNGHPSYGS SAAPQGSSLH RRPEPPQFSM PHAAAAAAYG SLCLPPQLNA  600
ASGGFSFGML PPAMAMAIPV PSLGNFMPAQ MPGHGSPMQG CSGLMLPRGE EKVNPEQQSR  660
LPVANGNAAA TYQQLMGRWP QGHQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-36274548878Probable WRKY transcription factor 4
2lex_A8e-36274548878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.121730.0embryo| leaf| pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G217700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444812.20.0probable WRKY transcription factor 3
TrEMBLA0A1Z5RBX40.0A0A1Z5RBX4_SORBI; Uncharacterized protein
STRINGSb07g028430.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-111WRKY DNA-binding protein 2