PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G217700.2.p
Common NameSb07g028430, SORBIDRAFT_07g028430
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 516aa    MW: 56107.7 Da    PI: 7.8978
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G217700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30107164159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgynWrKYG K+vk+se+prsYY+Ct+++Cpvkk vers  +++++ei+Y+g+H h+
  Sobic.007G217700.2.p 107 LDDGYNWRKYGEKQVKKSEHPRSYYKCTHPKCPVKKMVERSL-EGHITEIVYRGSHSHP 164
                           59****************************************.***************7 PP
2WRKY105.13.7e-33317375159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+++d k v++tYeg+Hnhe
  Sobic.007G217700.2.p 317 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYAGCSVRKHVERASNDLKSVITTYEGRHNHE 375
                           59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.263102166IPR003657WRKY domain
SuperFamilySSF1182908.24E-25104166IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.6E-27105166IPR003657WRKY domain
SMARTSM007748.3E-34107165IPR003657WRKY domain
PfamPF031061.3E-23108164IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-36302377IPR003657WRKY domain
SuperFamilySSF1182907.85E-29309377IPR003657WRKY domain
PROSITE profilePS5081137.275312377IPR003657WRKY domain
SMARTSM007742.6E-37317376IPR003657WRKY domain
PfamPF031061.8E-25318375IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MPLRNLLLPL PILRSKPSTL WTAEKGSSVV HQTQSLTKDS QGLNVHANPT ATKHETEENL  60
VKPKTCDSMF DEQSEEIQNG EDSSAPDTGT ADDGYFLRVN RRGMPLLDDG YNWRKYGEKQ  120
VKKSEHPRSY YKCTHPKCPV KKMVERSLEG HITEIVYRGS HSHPLPLPNS RPSVPLSHFN  180
DSEADGNFSS KPGPGYDSST SQGIAPKGQF QDVHSGALET KLSGSLTTTE IADTSVMESM  240
DVSSTLSSNE KGDRAMNGAV PSTNDMNEDE TESKRRKMEV SVASNTANIV TDMAAMASRT  300
AREPRIVVQT TSEVDILDDG YRWRKYGQKV VKGNPNPRSY YKCTYAGCSV RKHVERASND  360
LKSVITTYEG RHNHEVPAAR NSNGHPSYGS SAAPQGSSLH RRPEPPQFSM PHAAAAAAYG  420
SLCLPPQLNA ASGGFSFGML PPAMAMAIPV PSLGNFMPAQ MPGHGSPMQG CSGLMLPRGE  480
EKVNPEQQSR LPVANGNAAA TYQQLMGRWP QGHQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-36104378878Probable WRKY transcription factor 4
2lex_A5e-36104378878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.121730.0embryo| leaf| pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G217700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444812.20.0probable WRKY transcription factor 3
TrEMBLA0A1B6PJ130.0A0A1B6PJ13_SORBI; Uncharacterized protein
STRINGSb07g028430.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.15e-84WRKY DNA-binding protein 2