PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G210700.7.p
Common NameSb07g027790, SORBIDRAFT_07g027790
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family EIL
Protein Properties Length: 619aa    MW: 68185.6 Da    PI: 5.9936
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G210700.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3417.31.7e-127393751324
                           XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasd 89 
                           +el +rmwkd+++lkr++er+++l  ++  +++++k++k+++qa rkkm raQDgiLkYMlk mevcna+GfvYgiipekgkpv+gasd
  Sobic.007G210700.7.p  39 DELARRMWKDKVKLKRIRERQQKLALQRL-ELEKSKTKKISDQALRKKMTRAQDGILKYMLKLMEVCNARGFVYGIIPEKGKPVSGASD 126
                           79********************9775555.5********************************************************** PP

                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S-- CS
                  EIN3  90 sLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGke 178
                           ++r+WWkekv+fd+ngpaai+ky+ ++ +ls+ +s+   + +++hsl++lqD tlgSLLsalmqhc+p+qr++pl+kgv+pPWWP+G+e
  Sobic.007G210700.7.p 127 NIREWWKEKVKFDKNGPAAIVKYEVEHSMLSNPKSS---GAMNQHSLMDLQDGTLGSLLSALMQHCSPQQRSYPLDKGVPPPWWPSGNE 212
                           *******************************99988...89************************************************ PP

                           HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX.... CS
                  EIN3 179 lwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah.... 263
                            ww++lgl+k    ppy+kphdlkk+wkv+vLt vikhm+p++++ir+++r+sk+lqdkm+akes ++l vl++eek ++++ +     
  Sobic.007G210700.7.p 213 PWWPALGLPKGEA-PPYRKPHDLKKVWKVGVLTGVIKHMAPNFDKIRNRVRKSKCLQDKMTAKESLIWLGVLQREEKSIHSFGSAllpi 300
                           **********998.9****************************************************************9998887544 PP

                           XX.XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX..............XXXXXXXXXXXXXXXXXXXXX. CS
                  EIN3 264 ss.slrkqspkvtlsceqkedvegkkeskikhvqavktta..............gfpvvrkrkkkpsesakvsske 324
                           ++ s+++++++ ++s+++++dv+  +++  ++++++++ +               +p  rkr  kps++ ++s++e
  Sobic.007G210700.7.p 301 TQhSTSEDRTEGIYSSSDEYDVDRLEQPPRSTSSKDDEGDaqpvlqirgeqistRVP-KRKRHDKPSNQLAISKEE 375
                           225777899999***********6666666888888887756666666665532111.222223333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048734.9E-12539287No hitNo description
Gene3DG3DSA:1.10.3180.104.3E-68161292IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167689.94E-60167289IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MTDHLAIIAS ELGDATDFEV DGIDNLSEND VSDEEIDADE LARRMWKDKV KLKRIRERQQ  60
KLALQRLELE KSKTKKISDQ ALRKKMTRAQ DGILKYMLKL MEVCNARGFV YGIIPEKGKP  120
VSGASDNIRE WWKEKVKFDK NGPAAIVKYE VEHSMLSNPK SSGAMNQHSL MDLQDGTLGS  180
LLSALMQHCS PQQRSYPLDK GVPPPWWPSG NEPWWPALGL PKGEAPPYRK PHDLKKVWKV  240
GVLTGVIKHM APNFDKIRNR VRKSKCLQDK MTAKESLIWL GVLQREEKSI HSFGSALLPI  300
TQHSTSEDRT EGIYSSSDEY DVDRLEQPPR STSSKDDEGD AQPVLQIRGE QISTRVPKRK  360
RHDKPSNQLA ISKEETTKPK PRQRNRPSAR SPVAEVEVEV TQRNDNPPDV SCNAADGMNL  420
IDPIDVVGMT NQPTSSSHAP PTIGALQQHG DCQGNFLSPG AVINNYNSNQ AASAAQSSTY  480
LGDHPLACEG SDIANSWSGH SFRQDIGIGP IGFNPSQAVH QDLAMQQPLP LPMDHQAPII  540
GTGALATNDS YSLPTAGSGN SGTIVGETHQ QFMDDPFFGE AGDSTFGGLP FSLVPFSSPM  600
LNFDDLVDDD DLMPYLGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A2e-591672949136ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.214540.0root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G210700.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9730230.0EU973023.1 Zea mays clone 391915 ethylene-insensitive3-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445904.10.0ETHYLENE INSENSITIVE 3-like 3 protein
RefseqXP_021320257.10.0ETHYLENE INSENSITIVE 3-like 3 protein
RefseqXP_021320258.10.0ETHYLENE INSENSITIVE 3-like 3 protein
RefseqXP_021320259.10.0ETHYLENE INSENSITIVE 3-like 3 protein
RefseqXP_021320260.10.0ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231161e-135EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLC5YIS20.0C5YIS2_SORBI; Uncharacterized protein
STRINGSb07g027790.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-137ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]