PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G205200.1.p | ||||||||
Common Name | Sb07g027260, SORBIDRAFT_07g027260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 179aa MW: 19399 Da PI: 11.1197 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.6 | 4.9e-11 | 40 | 86 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 GVr + rgrW+A+Ir p + r+r ++g+f a +Aa a++ a +++g Sobic.007G205200.1.p 40 GVR-ERVRGRWAAQIRIPGT---RTRLWIGRFELAVQAALAYDTALFCFHG 86 898.5559*********833...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 17.398 | 37 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-13 | 37 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-17 | 38 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-12 | 38 | 90 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-5 | 40 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.39E-14 | 40 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MARVPRGSWM ARRRELGRLC HGSAHSAASR NYPEGCTWMG VRERVRGRWA AQIRIPGTRT 60 RLWIGRFELA VQAALAYDTA LFCFHGPDRL PSPRRFNFPA APRPIIPEDK RATLTRADIK 120 RIAESHARFL ANFYVGELPA VNPAAASPPP PSAAAADGAA VVADDQATAA TDGSNDNN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G205200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444751.1 | 1e-126 | ethylene-responsive transcription factor ERF015 | ||||
TrEMBL | C5YIM3 | 1e-125 | C5YIM3_SORBI; Uncharacterized protein | ||||
STRING | Sb07g027260.1 | 1e-126 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22810.1 | 2e-16 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G205200.1.p |
Entrez Gene | 8064005 |