PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G190333.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 236aa MW: 24707.3 Da PI: 10.8306 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.8 | 3.8e-31 | 23 | 164 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrF+Ptdeelvv+yL++k+ g +l++ vi+ v d+y+++Pwd +++e e yfF+ r + ++ rat+sg+Wk Sobic.007G190333.1.p 23 LPPGFRFRPTDEELVVQYLRRKAFGVPLPA-AVIPVVrDLYSLDPWDVVVvpgpD-ASSEGEKYFFAVRPAGAG-KSGGARATASGRWK 108 79****************************.8899999**********6334332.2345699****9988765.678899******** PP NAM 85 atgkdkevlsk.....kgelvglkktLvfy.......kgrapkgektdWvmheyrl 128 +gk+k+v+ ++ lvg+k+ ++f +a + t Wvmheyrl Sobic.007G190333.1.p 109 PSGKEKPVVLPrpcggGSLLVGVKRAMTFVprrkkkaASSAAAALTTGWVMHEYRL 164 *********99899877777**********7654332233444459********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-41 | 21 | 190 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.4 | 23 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-21 | 24 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MAAERAPVLV RHAGGGVEAL RQLPPGFRFR PTDEELVVQY LRRKAFGVPL PAAVIPVVRD 60 LYSLDPWDVV VVPGPDASSE GEKYFFAVRP AGAGKSGGAR ATASGRWKPS GKEKPVVLPR 120 PCGGGSLLVG VKRAMTFVPR RKKKAASSAA AALTTGWVMH EYRLAAPLHK NGCSLAQAQG 180 EWVVCRVFQK GSSSSRPSRR RAVPAAHPAA VAASPSSASS CVTDGSSSDL DEVNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-30 | 23 | 196 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-30 | 23 | 196 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-30 | 23 | 196 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-30 | 23 | 196 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-30 | 23 | 196 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-30 | 23 | 196 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-30 | 23 | 196 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-30 | 23 | 196 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-30 | 23 | 196 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-30 | 23 | 196 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-30 | 23 | 196 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-30 | 23 | 196 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-30 | 23 | 196 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-30 | 23 | 196 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.3246 | 0.0 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G190333.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955506 | 0.0 | EU955506.1 Zea mays clone 1534835 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021320646.1 | 1e-167 | NAC domain-containing protein 18 | ||||
TrEMBL | A0A1Z5RBQ7 | 1e-166 | A0A1Z5RBQ7_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G054252_P02 | 1e-122 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 | Representative plant | OGRP14562 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 5e-29 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G190333.1.p |