PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G183100.1.p
Common NameSb07g025330, SORBIDRAFT_07g025330
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 281aa    MW: 29529.2 Da    PI: 6.8653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G183100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.3e-13103148454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +h e+Er+RRd++N +f eLr  +P+      ++++Ka+ L  A  YI +L
  Sobic.007G183100.1.p 103 SHVEAERQRRDKLNRRFCELRAAVPTV-----TRMDKASLLADAAAYIAEL 148
                           799***********************8.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.05399148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16102164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16103163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-13103153No hitNo description
PfamPF000101.3E-10103148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-12105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDEVVCWPAA SCTSPSSPAA FSTTGQHPEL DFVSSELLER WLGLGSDDCL DDGAGWGDEG  60
SRSAGQDDVD DQSGSGPGQP LAPAPPKRRG RKPGPRSNGP VISHVEAERQ RRDKLNRRFC  120
ELRAAVPTVT RMDKASLLAD AAAYIAELRD RVEQLEAEAK QAATTSVAAA AVTCSATLVA  180
GVTRSPTSFG GFHEKLEVRM VGKGAAALRL TTTTTAASHV HAPARFMLAL RSLDLPHASV  240
CRVGDVTVQD AVVDVPAAAL RSERGLRVAL LHSLQRFAAS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-18102161766Transcription factor MYC2
5gnj_B4e-18102161766Transcription factor MYC2
5gnj_E4e-18102161766Transcription factor MYC2
5gnj_F4e-18102161766Transcription factor MYC2
5gnj_G4e-18102161766Transcription factor MYC2
5gnj_I4e-18102161766Transcription factor MYC2
5gnj_M4e-18102161766Transcription factor MYC2
5gnj_N4e-18102161766Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G183100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0406794e-88BT040679.1 Zea mays full-length cDNA clone ZM_BFc0116D15 mRNA, complete cds.
GenBankKJ7267874e-88KJ726787.1 Zea mays clone pUT2108 bHLH transcription factor (bHLH145) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444645.10.0transcription factor bHLH14
TrEMBLA0A1Z5RAN90.0A0A1Z5RAN9_SORBI; Uncharacterized protein
STRINGSb07g025330.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Representative plantOGRP1106048
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-08bHLH family protein