PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G166000.1.p
Common NameSb07g023890, SORBIDRAFT_07g023890
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 426aa    MW: 44897.4 Da    PI: 8.2997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G166000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.7e-07249271123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C+ Cgk F+r  nL+ H+r H
  Sobic.007G166000.1.p 249 HYCQVCGKGFKRDANLRMHMRAH 271
                           68*******************99 PP
2zf-C2H210.70.0016377392621
                           TTEEESSHHHHHHHHH CS
               zf-C2H2   6 CgksFsrksnLkrHir 21 
                           Cg+sFsrk+ L+ H+ 
  Sobic.007G166000.1.p 377 CGTSFSRKDKLVGHLA 392
                           **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.78E-6247274No hitNo description
SMARTSM003550.0034249271IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653249276IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-6249275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280251271IPR007087Zinc finger, C2H2
SMARTSM00355140307340IPR015880Zinc finger, C2H2-like
SMARTSM0035547345371IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621366399IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MIGRGGNPYY LQNQQQQLFH HGHALDATMD GGGFMAEPPT PASSGCSAAD AQCHALLYYN  60
LSVLRDKVQQ LQPLVGLAVA HDGPGPVAAA PGAGAVIQEI IAAASSMMYA FQQLCGHGGA  120
VPASASATAA QAQQGGTSSG VVVADAAATC GAGDNHQHQQ AAVIDHVMVM QQQWQQEHRY  180
DGGYGGRIHH DSKTTTPVAA AAAMPSSSHP RPTTAAVMMA EEDEDVGVGV AGGTIIELEA  240
TELLAKYTHY CQVCGKGFKR DANLRMHMRA HGDEYKSSAA LANPAKAAAA AGGDAAAAST  300
SSSRSLYSCP QEGCRWNRKH AKFQPLKSVI CAKNHYKRSH CPKMYVCNRC NRKHFSVLSD  360
LRTHEKHCGD HRWLCSCGTS FSRKDKLVGH LALFTGHQPA VPLDRQANGG RRSSSSMSTS  420
TQLGT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G166000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0632901e-101AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
GenBankAP0045871e-101AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAP0055441e-101AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBankAP0149641e-101AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-101CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320360.10.0zinc finger protein STOP1 homolog
TrEMBLA0A1Z5RAC40.0A0A1Z5RAC4_SORBI; Uncharacterized protein
STRINGSb07g023890.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.17e-79C2H2 family protein