PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.007G136300.2.p

Common Name

Sb07g021200, SORBIDRAFT_07g021200

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NAC

Protein Properties

Length: 365aa MW: 40642.2 Da PI: 6.0448

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.007G136300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.1	1.3e-47	16	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka..eekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrF Ptdeel+++yL++k+ + ++++ +i++vd+yk+ePwdLp + +++a + +e yfF+ r +k+++g r++rat+ gyWk+ Sobic.007G136300.2.p 16 LPPGFRFFPTDEELITCYLARKAMDASFTT-AAIRDVDLYKTEPWDLPcEqQAAAggDLQEGYFFCMRGSKSPSGVRARRATQLGYWKS 103 79***********************999.78**********953333232244488*********************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkdk+v+s+ ++ +vg++ktLvfy+grap+gektdWvmhey++ Sobic.007G136300.2.p 104 TGKDKAVHSRsGRLVVGTRKTLVFYRGRAPRGEKTDWVMHEYAM 147 *****9555569************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-52	12	171	IPR003441	NAC domain
PROSITE profile	PS51005	53.283	16	171	IPR003441	NAC domain
Pfam	PF02365	8.2E-25	17	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MMRGVEQQQR IEELALPPGF RFFPTDEELI TCYLARKAMD ASFTTAAIRD VDLYKTEPWD 60 LPCEQQAAAG GDLQEGYFFC MRGSKSPSGV RARRATQLGY WKSTGKDKAV HSRSGRLVVG 120 TRKTLVFYRG RAPRGEKTDW VMHEYAMGER RSSALLRGAQ SEWVICRVFT RKHHPMTSDD 180 RKLETEELAV VQGHHSPGHH HPLAAMEGDD GFDSEQEAAA PPAVAETQHT AAGSHLGSTQ 240 SMEGDHQQQH RQMAHDELLT TTMHHHGSSS CVVSPCSCWL NQHDDHHQLV GLGGAHSALL 300 PIMQMQSVVD DADYYLPELL EYGGPLDTGG GEEDRRRRAE TNFTSVIGSS DDLDGLYWYW 360 DSGF*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MMRGVEQQQR IEELALPPGF RFFPTDEELI TCYLARKAMD ASFTTAAIRD VDLYKTEPWD  60
LPCEQQAAAG GDLQEGYFFC MRGSKSPSGV RARRATQLGY WKSTGKDKAV HSRSGRLVVG  120
TRKTLVFYRG RAPRGEKTDW VMHEYAMGER RSSALLRGAQ SEWVICRVFT RKHHPMTSDD  180
RKLETEELAV VQGHHSPGHH HPLAAMEGDD GFDSEQEAAA PPAVAETQHT AAGSHLGSTQ  240
SMEGDHQQQH RQMAHDELLT TTMHHHGSSS CVVSPCSCWL NQHDDHHQLV GLGGAHSALL  300
PIMQMQSVVD DADYYLPELL EYGGPLDTGG GEEDRRRRAE TNFTSVIGSS DDLDGLYWYW  360
DSGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-43	4	172	5	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-43	4	172	5	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-43	4	172	5	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-43	4	172	5	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-43	4	172	8	169	NAC domain-containing protein 19
3swm_B	2e-43	4	172	8	169	NAC domain-containing protein 19
3swm_C	2e-43	4	172	8	169	NAC domain-containing protein 19
3swm_D	2e-43	4	172	8	169	NAC domain-containing protein 19
3swp_A	2e-43	4	172	8	169	NAC domain-containing protein 19
3swp_B	2e-43	4	172	8	169	NAC domain-containing protein 19
3swp_C	2e-43	4	172	8	169	NAC domain-containing protein 19
3swp_D	2e-43	4	172	8	169	NAC domain-containing protein 19
4dul_A	2e-43	4	172	5	166	NAC domain-containing protein 19
4dul_B	2e-43	4	172	5	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.007G136300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT040387	0.0	BT040387.1 Zea mays full-length cDNA clone ZM_BFc0088H11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002444391.1	0.0	NAC domain-containing protein 83
TrEMBL	C5YL79	0.0	C5YL79_SORBI; Uncharacterized protein
STRING	Sb07g021200.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14765	21	22
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-61	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Sobic.007G136300.2.p
Entrez Gene	8075407