PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G053700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 590aa    MW: 67658.5 Da    PI: 9.5631
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G053700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-07396437347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE e+  + v++ G + W+  a+++g  + + ++k+ w+  
  Sobic.007G053700.1.p 396 KWTEEEREIVRRFVEKNGRN-WRVLAKELG--KNEIHVKDLWRRM 437
                           8*****************66.********8..8999***999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-5320395IPR009057Homeodomain-like
SMARTSM007170.43320391IPR001005SANT/Myb domain
PROSITE profilePS500904.658323384IPR017877Myb-like domain
SuperFamilySSF466895.28E-9369450IPR009057Homeodomain-like
PROSITE profilePS5129412.455389442IPR017930Myb domain
SMARTSM007178.1E-4393440IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-9396450IPR009057Homeodomain-like
CDDcd001670.00182396438No hitNo description
PfamPF139211.5E-8397455No hitNo description
PROSITE profilePS500907.666439507IPR017877Myb-like domain
SuperFamilySSF466891.72E-5441549IPR009057Homeodomain-like
SMARTSM007171.3443509IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-7451550IPR009057Homeodomain-like
PROSITE profilePS500905.227509548IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MERVSGTECR EGMAVMSNKE EKECQITKVE KGRKNGKKHK DKGQGGDCEG KAVVMSNKKE  60
KGCQITKGEK GWKKGKKRKD KGRGGDCDSS IHSGDRNHSI EMEQADVSAT MAENPCLEHA  120
EGAMSKSSVK KHRKKKKKDK EVETNGQNQV LDPDENVGSE DAERNNRERE HDRKSKKCKR  180
KHQDDETASS GSSAKIVLGK DKRRKKECLV TWDMEEGNKS VMSKIGKKTE SNKKRRKERN  240
NVGVDLRRNA PAGEGKNGKG IKERKMCEDE NDDGEREKEN MAKRKDKGRR VSFTDDVEVF  300
NIGGSDDVEG DGSGEIELVH GRRFTSEEDA KLMEAMVKYA EMRQLGEKGL EMIGDCKKYP  360
ELKGCWPEIA KSLPHRPTDA VYKRARILLQ RSAERKWTEE EREIVRRFVE KNGRNWRVLA  420
KELGKNEIHV KDLWRRMKPK NLRRGHWTQD EYQNLFDLVN LDLRMKAHQY FDPGHRQIRD  480
NISWEAISDK LTTRNNHECC QKWYLQLASP LVKEGIWADK DDYLLVEASG ELCRQRWNQM  540
VRLLGGHRDK PFIEQVEVLA RRYCPEMLPY RESKAGDLSA GELAGGSDL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137KKHRKKKKK
2132138RKKKKKD
3132139RKKKKKDK
4232236KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.157180.0callus| ovary| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G053700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319971.10.0DNA-binding protein REB1
RefseqXP_021319972.10.0DNA-binding protein REB1
TrEMBLA0A1Z5R8970.0A0A1Z5R897_SORBI; Uncharacterized protein
STRINGSb07g004330.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Representative plantOGRP53221418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.17e-82MYB_related family protein