PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G050300.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 372aa    MW: 38966 Da    PI: 7.4973
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G050300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.4e-10103128127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +kt+lC+ f++ GtC+y  +C+FaHg+
  Sobic.007G050300.2.p 103 FKTKLCCKFRA-GTCPYVTNCNFAHGM 128
                           69*********.*************95 PP
2zf-CCCH18.14.7e-06182207126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           yk + C+ f+    C+yGd C+F H+
  Sobic.007G050300.2.p 182 YKGRHCKKFYTEEGCPYGDACTFLHD 207
                           77888********************7 PP
3zf-CCCH43.35.8e-14246271126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt++C+ +  tG+C++G++C+FaHg
  Sobic.007G050300.2.p 246 WKTRICNKWEMTGYCPFGSKCHFAHG 271
                           8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-14100135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-8100133IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014102128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028102129IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7103128IPR000571Zinc finger, CCCH-type
SMARTSM003560.3181208IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629181209IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-9181209IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7181209IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-15241272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-9242272IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-9245272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544245273IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-11246271IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDYTNAIHII PDAAGPDAWT NAAPSTGGDA AIWATEDDYR QWNADPGYGD RNPSSRAGSE  60
QPPPGKKARG GAGAGGGGGG GGGSDGGSGS STSKSRAIGK MFFKTKLCCK FRAGTCPYVT  120
NCNFAHGMEE LRKPPPNWQE IVAAHEEATE QREEHQIPIM TSGSVVAGDG GGGGSSQGGR  180
AYKGRHCKKF YTEEGCPYGD ACTFLHDEQS KARESVAISL SPTVGAGGYN AAASANGVMV  240
QKPSNWKTRI CNKWEMTGYC PFGSKCHFAH GSAAITAELH KYGGGLMDVD GRDIASTPDS  300
KQAGASTKAP ADSAAASTAM PPHADVYHLG IQSQRSTIVS QRSGQLQRPI QKWKGPDKIS  360
RIYGDWIDEN E*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.203960.0embryo| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G050300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0354040.0BT035404.1 Zea mays full-length cDNA clone ZM_BFb0059F20 mRNA, complete cds.
GenBankBT0678900.0BT067890.1 Zea mays full-length cDNA clone ZM_BFc0191K02 mRNA, complete cds.
GenBankEU9640070.0EU964007.1 Zea mays clone 275074 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
GenBankJX4284640.0JX428464.1 Zea mays subsp. mays clone pUT3059 C3H31 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445099.20.0zinc finger CCCH domain-containing protein 56 isoform X1
SwissprotQ84UQ30.0C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A1Z5R8640.0A0A1Z5R864_SORBI; Uncharacterized protein
STRINGGRMZM2G305582_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-102C3H family protein