PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G047400.1.p
Common NameSb07g003870, SORBIDRAFT_07g003870
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 748aa    MW: 81996 Da    PI: 6.0947
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G047400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-155195147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          r rWT+ E++++++a k++G   W +I +++g ++t+ q++s+ qk+
  Sobic.007G047400.1.p 51 RERWTEAEHKRFLEALKLYGRA-WQRIEEHVG-TKTAVQIRSHAQKF 95
                          78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.99E-1645101IPR009057Homeodomain-like
PROSITE profilePS5129419.14746100IPR017930Myb domain
TIGRFAMsTIGR015571.7E-164998IPR006447Myb domain, plants
SMARTSM007176.5E-125098IPR001005SANT/Myb domain
PfamPF002491.5E-125194IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-85191IPR009057Homeodomain-like
CDDcd001671.09E-85396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MTSTPSDKAN NCCTFPFYFC LFLPDLEMEV NSSGEEMVVK VRKPYTITKQ RERWTEAEHK  60
RFLEALKLYG RAWQRIEEHV GTKTAVQIRS HAQKFFTKLE KEAMTNGTSP GQALDIDIPP  120
PRPKRKPNNP YPRKSGLSSE TPTKDFPNDK SAKPNMPLSN GNVQMAGDAS LQKFQRKELS  180
EKGSCSEVLN LFRDAPSASF SSVNKSSSNH GAPRGVEASK TEIRDMTIME NNSLNPNMQE  240
DVKEISDHEM ERLNSIQISS KCEHSHEGYL DLSMQQMKLK PKSVETTYVD KQTARASHSL  300
AEKNGTASIL VTATEGTHSD QTSDQVGING SINPCIHPML SSDPKFDSSA TPQHFPHNYA  360
AFAPMMQGNC NQDTYRSFVN MSSTFSSMLV STLLSNPAIH AAARLAASYW PAAEGNTLID  420
PNQENPADDV QGRNIGSPPS MASIVAATVA AASAWWATQG LLPFFTPPMA FPFVPAPSAA  480
FPTVDVPRPS EKDRDFPVEN AQKECQEAQK QGQFEGLRVA ASSVSDGSGK GEVSLHTELK  540
ISPVQNADAT PTTGADTSDA FRNKKKQDRS SCGSNTPSSS DVDADNVPEK EDNANEKVKQ  600
ASCSNSSAGD TNHRRFRSSG STSDSWKEVS EEGRLAFDAL FSREKLPQSF SPPQAEDSKE  660
VAKEEENEVT TVAVDLNKNA TSIDHDLDTM DEPRASFPNE LSHLKLKSRR TGFKPYKRCS  720
VEAKENRVPA SDEVGTKRIR LESEAST*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.47860.0leaf| panicle
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G047400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9545680.0EU954568.1 Zea mays clone 1470263 LHY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443890.10.0protein CCA1
RefseqXP_021320961.10.0protein CCA1
RefseqXP_021320963.10.0protein CCA1
RefseqXP_021320964.10.0protein CCA1
RefseqXP_021320965.10.0protein CCA1
RefseqXP_021320966.10.0protein CCA1
RefseqXP_021320967.10.0protein CCA1
RefseqXP_021320968.10.0protein CCA1
RefseqXP_021320969.10.0protein CCA1
RefseqXP_021320970.10.0protein CCA1
RefseqXP_021320971.10.0protein CCA1
RefseqXP_021320972.10.0protein CCA1
RefseqXP_021320973.10.0protein CCA1
RefseqXP_021320974.10.0protein CCA1
RefseqXP_021320975.10.0protein CCA1
RefseqXP_021320976.10.0protein CCA1
RefseqXP_021320977.10.0protein CCA1
RefseqXP_021320978.10.0protein CCA1
RefseqXP_021320979.10.0protein CCA1
RefseqXP_021320980.10.0protein CCA1
TrEMBLC5YHA40.0C5YHA4_SORBI; Uncharacterized protein
STRINGSb07g003870.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Representative plantOGRP1297144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.11e-42circadian clock associated 1