PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G031600.1.p
Common NameSb07g002750, SORBIDRAFT_07g002750
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 944aa    MW: 104537 Da    PI: 9.3936
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G031600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.2e-06207227425
                           ---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                           ++Cr+f   G C++G++C+F H
  Sobic.007G031600.1.p 207 RPCRDFVS-GRCRRGSNCRFLH 227
                           79999999.************* PP
2zf-CCCH25.91.7e-08299320426
                           ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           ++C +fa+ G C +G++C FaHg
  Sobic.007G031600.1.p 299 APCINFAK-GKCIRGASCLFAHG 320
                           79******.*************9 PP
3zf-CCCH23.41.1e-07359378525
                           --SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                           +C+ffa+ G C++G++C++ H
  Sobic.007G031600.1.p 359 PCKFFAE-GRCRRGENCPYLH 378
                           8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.347203230IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4204229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-6207229IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5207227IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235295322IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4296321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4299321IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-6299320IPR000571Zinc finger, CCCH-type
PfamPF161311.1E-6330379IPR032297Torus domain
SMARTSM003562.6E-5354380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.896354381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-7355379IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5357380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 944 aa     Download sequence    Send to blast
MTSETRKQRS KWDTKEGSHE VVEISEDESP DKTDVHRKGG DLHTKPDTSM HHEGAGNEKE  60
HADGFNKDMK EIQPKASSER SQPLRMADEH DNNEWSKAAG NQGTNRYADD RRRGDGWGTA  120
PSRGYSSTRA PSDPDAWRQC SRSPSPRGVW NRPRRNRSRS RSRSRNRSRS RSRSIGRGRG  180
RSRSPYFADR GSEWRVERGR TSGGPVRPCR DFVSGRCRRG SNCRFLHEDG GHRPFEDHYP  240
ADPRERFPAD PRERYGYQSK EFMDTREPND YLRSRQSRDR YDDGPWERSE PRRDYRYPAP  300
CINFAKGKCI RGASCLFAHG DSASHGRWRD EARESAHDRV GPDSSYGNRT EHRRVNKNPC  360
KFFAEGRCRR GENCPYLHEE APQSQIGVSA PDEDLNHSDG HAARGNYSNW GEQNNAVHAT  420
SQILSRDDRE NPISQSIGRN DSRNDYENRH SKDSGKSQYQ IIPQEDFGSQ GQKKHEAAIP  480
PQPQLLTPVQ TTVHSMHDEK VSEMDSQNAP SSIADLSVQP GLHSANIIAE QSLGQILQRH  540
DAIPHIPGQP TLPVTTQLQN VTSSFPSNSH VQQNNFPVHQ NRQEQFVVPQ AAANNSTPSM  600
QGQPVASHMG HGQHGGYGLE PQALPNLSAH NGHNFNVASQ VPPNITAVHA GQTQATIDIP  660
RLGQDNGPQS IHNMEIQPMS PHVQSQSLQG LPVVPTTSSA DMTGVPVSHN AVKSEEVSRV  720
TASLAQYFGN TAFGAGTVGL QSSQSNMNAS LVATSSAAPP AVQPNQWHWA QQQTGIVQPG  780
LPVPPQMQQQ QAPQSFQTPI AVGSSNGKSM LLPNAAAPVG PTAAASVAKE TVPPESKKGE  840
KKNSDAEAHE DGDNNKKSKD SKQLKMFKVA LADFVKEALK PTWKDGQMSR EVHKTIVKKV  900
VDKVTSTVEN TPPTKEKIDI YMTYSKEKLN KLVQAYVGKY AKA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162172RSRNRSRSRSR
2164172RNRSRSRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.67090.0embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G031600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4662000.0AF466200.2 Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2, fertilization-independent endosperm proteins, hypothetical protein, putative non-LTR retroelement reverse transcriptase, OCL5 protein, tryptophan synthase beta-subunit, hypothetical proteins, putative AP endonuclease, putative RNA polymerase II complex component SRB7, putative beta-1,3-glucanase, hypothetical protein, TNP2-like protein, hypothetical protein, putative phosphate/phosphoenolpyruvate translocator, putative protein, hypothetical proteins, putative galactosyltransferase family, hypothetical protein, putative cytochrome P450 family, putative lipid transfer protein, putative photoreceptor-interacting protein, and hypothetical protein genes, complete cds; and hypothetical protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320443.10.0zinc finger CCCH domain-containing protein 55-like
RefseqXP_021320444.10.0zinc finger CCCH domain-containing protein 55-like
SwissprotQ6YYC00.0C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBLA0A1B6PF960.0A0A1B6PF96_SORBI; Uncharacterized protein
STRINGSb07g002750.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Representative plantOGRP1203666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-07C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]