PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G266400.2.p
Common NameSb06g032870, SORBIDRAFT_06g032870
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 435aa    MW: 47583.1 Da    PI: 7.3626
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G266400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.18.7e-15302395393
                           EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           k lt+sdv++ gr+vlpkk ae +    +   + +  l + d e   +W++k++y  ++ks++y+l+  + eFvk +gL+++D++++++
  Sobic.006G266400.2.p 302 KDLTNSDVGNIGRIVLPKKDAEPNlpilED--KDGLILEMDDfELPAVWKFKYRYwpNNKSRMYILE-TTGEFVKRHGLQAKDILIIYR 387
                           789******************999886432..34556777775555*********888888888888.9*******************7 PP

                           -SSSEE..E CS
                    B3  85 dgrsefelv 93 
                           ++r ++++v
  Sobic.006G266400.2.p 388 NKR-SGRYV 395
                           664.44455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-24295402IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-17298395IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.4E-10300402IPR003340B3 DNA binding domain
PfamPF023621.1E-11302395IPR003340B3 DNA binding domain
CDDcd100177.66E-18304395No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MANAKGSSAG AAGAGHADLG RAISHEQHQA FMMASVHRAA PGAANVHQQH FHQYPAGLIR  60
APVPMPVHVP VSQTPYSAQI AVPPPQPLIP PPDHRLHSLP PTGCYQDYSP YGNTASLQHT  120
AARGFADWGV HNNAIVSLAH ATSFANGSNN INSNGLLHQN LSPYTTHTWT TTYVQRPYNT  180
AYAPATMNML QTPSFHSNNH EKESGAVFSN SFNMGPSGTP TSPFQLTSPS STNYTSTQIF  240
EETNNLEDTS RVFGGGDNES NNSEEPDPTP AVEMEDLNQG NGHISFTNKK VNCQDYRMVL  300
RKDLTNSDVG NIGRIVLPKK DAEPNLPILE DKDGLILEMD DFELPAVWKF KYRYWPNNKS  360
RMYILETTGE FVKRHGLQAK DILIIYRNKR SGRYVARAVK AEHIPAPGCE CIKAGNPREE  420
CGFSVSPSVK KIIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A2e-342853963109B3 domain-containing transcription factor LEC2
6j9c_D2e-342853963109B3 domain-containing transcription factor LEC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.60640.0pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G266400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0431380.0BT043138.2 Zea mays full-length cDNA clone ZM_BFc0107M18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448770.10.0putative B3 domain-containing protein Os04g0676650
TrEMBLC5YAI10.0C5YAI1_SORBI; Uncharacterized protein
STRINGSb06g032870.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-35B3 family protein