PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G245500.1.p
Common NameSb06g031120, SORBIDRAFT_06g031120
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 489aa    MW: 52588.1 Da    PI: 6.3273
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G245500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.15.8e-15140199155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Sobic.006G245500.1.p 140 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 199
                           57*******************666664477446*************************98 PP
2AP248.12.8e-15242293155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Sobic.006G245500.1.p 242 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 293
                           57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-12140199IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-17140208IPR016177DNA-binding domain
CDDcd000181.07E-21140209No hitNo description
SMARTSM003803.1E-29141213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-16141208IPR001471AP2/ERF domain
PROSITE profilePS5103219.256141207IPR001471AP2/ERF domain
PRINTSPR003672.5E-6142153IPR001471AP2/ERF domain
PfamPF008476.1E-10242293IPR001471AP2/ERF domain
CDDcd000181.70E-24242303No hitNo description
SuperFamilySSF541715.17E-18242303IPR016177DNA-binding domain
SMARTSM003802.1E-33243307IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-18243301IPR001471AP2/ERF domain
PROSITE profilePS5103219.348243301IPR001471AP2/ERF domain
PRINTSPR003672.5E-6283303IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MDTSHHYPWL NFSLAHHGDL EEEERGAAAE LAAIAGAAPP PKLEDFLGGG VINGESARSG  60
GGVPVAAPEV SAPAEMYDSD LKFIAAAGFL GGGSAAGPVA TSPLSSLDQA DPKLALPAAA  120
AAAPAPEQRK AVDSFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQVYLGGY  180
DKEEKAARAY DLAALKYWGS STTTNFPVAE YEKELEEMKT MTRQEFVASL RRKSSGFSRG  240
ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF  300
EISRYNVESI MNSNIPMGSM SAGGRSNKAL ESPPSGSPDA MPVEASTAPL FAALPVKYDQ  360
QQQDYLSMLA LQHHQQGNLQ GLGFGLYSSG VNLDFANSHS TASSMTHCYV NGGTVSSHEQ  420
HQHHQQLQDH QQQGESETQQ SSNSCSSLPF ATPIAFNGSY ESSMTAAGPF GYSYPNVAAF  480
QTPIYGME*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.207470.0embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G245500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0692150.0BT069215.1 Zea mays full-length cDNA clone ZM_BFb0341N12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318155.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-136AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1B6PNN90.0A0A1B6PNN9_SORBI; Uncharacterized protein
STRINGSb06g031120.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-120AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]