PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G204300.1.p
Common NameSb06g027540, SORBIDRAFT_06g027540
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 272aa    MW: 31996.9 Da    PI: 8.0848
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G204300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.77.4e-2418100186
              trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           +W  qe+++Li ar eme++  + ++++k+ We+v++++rerg++r+++qCk+kw+nl +ryk  ++++ +      ++cp+f++l+
  Sobic.006G204300.1.p  18 QWGAQETRELIMARGEMERETVAaRRSAKTMWEAVAARLRERGYRRTAEQCKCKWKNLVNRYKGKETSDPEI----GRQCPFFEELH 100
                           7*****************9877626899************************************99999985....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122037.77E-181783No hitNo description
Gene3DG3DSA:1.10.10.605.9E-41877IPR009057Homeodomain-like
PfamPF138371.5E-2118101No hitNo description
PROSITE profilePS500907.5611976IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MMEAGGAGAG GRDERVPQWG AQETRELIMA RGEMERETVA ARRSAKTMWE AVAARLRERG  60
YRRTAEQCKC KWKNLVNRYK GKETSDPEIG RQCPFFEELH AVFTERARNM QRQLLESESG  120
ASVKRKLKRP GGDRSSGESD DEDDGGEESD DEKPMHSRKR KADDKKQQYQ RMSEKSRAGI  180
SSIHELLQDF LVQQQHIDVR WQEMMERRAQ ERVVFEQQWR QTMQKLEQER LLLEHSWMER  240
EEQRRMREEA RAEKRDALLT TLLNKLLQED L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G204300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9631540.0EU963154.1 Zea mays clone 258384 transcription factor GT-3b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448463.10.0trihelix transcription factor GT-3b
TrEMBLC5YF690.0C5YF69_SORBI; Uncharacterized protein
STRINGSb06g027540.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Representative plantOGRP22621535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.12e-28Trihelix family protein