PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G181600.1.p
Common NameSb06g025600, SORBIDRAFT_06g025600
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 313aa    MW: 33250.7 Da    PI: 8.4365
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G181600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.33.5e-282275255
               G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          pr+rW+ +LH++F++a++ LGG++kAtPk il++m+vk Lt++hvkSHLQ++R 
  Sobic.006G181600.1.p 22 PRMRWSADLHRSFLQAIDCLGGQHKATPKLILQFMGVKELTISHVKSHLQMHRA 75
                          9***************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-261876IPR009057Homeodomain-like
SuperFamilySSF466892.15E-141975IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-222275IPR006447Myb domain, plants
PfamPF002492.0E-52374IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGSGGGGRNG AVARRYIRSK EPRMRWSADL HRSFLQAIDC LGGQHKATPK LILQFMGVKE  60
LTISHVKSHL QMHRAARLGA GRGGPGMQRR HSCTGDEQGP KEEEFLCPPP PLKRVRMGYD  120
ESMQGSHGVS DARTTAAAAG GLYCIDDYMQ AMASMGRRIK EEGLIRWQRR DAAADAPATI  180
AAATPSNLQA MGCLVQESDP FKIRRPEARH LGSALIQQDA SNKEDGSGCP LFSSFSIAAK  240
DEPSEQCSLS LSLGLDPRCA RAMTAASSPS GESSCILMAS PERRSSSDCS GHSGCFVGPG  300
VSLELSLSIC GS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-152377357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-152377357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-152377357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-152377357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G181600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0382181e-123BT038218.1 Zea mays full-length cDNA clone ZM_BFb0217P21 mRNA, complete cds.
GenBankJX4699801e-123JX469980.1 Zea mays subsp. mays clone UT3340 G2-like transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001347916.11e-150uncharacterized protein LOC100279589
TrEMBLC5YE210.0C5YE21_SORBI; Uncharacterized protein
STRINGSb06g025600.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.11e-23G2-like family protein