PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G175700.3.p
Common NameSb06g025060, SORBIDRAFT_06g025060
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 587aa    MW: 64907.2 Da    PI: 4.9505
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G175700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.8e-12396442455
                           HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           +h +  r+RR+++N+ f  L++l+P+        K++Ka+iL +++ Y+k+Lq
  Sobic.006G175700.3.p 396 NHIMSQRKRREKLNEMFLILKSLVPSvH------KVDKASILAETIAYLKELQ 442
                           799999********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.2E-5022206IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.072392441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.67E-15395446No hitNo description
SuperFamilySSF474591.44E-16395457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-9396442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-15396453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-13398447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MAPSASPVQE GLQQAAERQL MRNQLAAAAR SINWTYAFFW SISSTQPGVL TWTDGFYNGE  60
VKTRKISSSV ELTADQLVMQ RSEQLRELYE ALLSGECDRR PAPVRPVSSL SPEDLGDTEW  120
YYVVCMTYTF RPGQGLPGRS FASNEYVWLC NAHLAASKAF PRALLAKSAS IQSIVCIPLM  180
GGVLELGTTD TVPEDPDLIS RATAAFWEPQ CPTYSEYPST NPSANETGEA ADDDVVVFED  240
LDPNAMDMET MTAFGGHGQE LGEAESLFNA NLKYITKEFD EFYSLCEEMD MQQLEDDWTM  300
VNGSNFEDPS SLQPAPPGAT TANVADTSST RADSSRATSF MAWTRSSQSY SDEVAAVSVI  360
EEPQKLLKKV VAGSGAWANY GGRDTIGTFQ QSGIKNHIMS QRKRREKLNE MFLILKSLVP  420
SVHKVDKASI LAETIAYLKE LQRRIQELES SRELTTHPSE TTRSIKKTRG NGSVRKKPYA  480
GSKRKSPDDL EKKHEHPWIL PKDGTSNITV TVGNTDVLLE VQCRWEELLM TRVFDAIKSL  540
HLDVLSVQDS APDGFIGLKI RAQFVGSGAI MPWMISEALR KAIGKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A4e-203320262227Transcription factor MYC3
4ywc_A4e-203320262227Transcription factor MYC3
4ywc_B4e-203320262227Transcription factor MYC3
5t0f_A3e-203320223188Transcription factor MYC3
5t0q_A3e-203320223188Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401406RKRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G175700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318739.10.0anthocyanin regulatory R-S protein isoform X1
RefseqXP_021318740.10.0anthocyanin regulatory R-S protein isoform X1
SwissprotP130270.0ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLA0A1B6PMK30.0A0A1B6PMK3_SORBI; Uncharacterized protein
STRINGSb06g025060.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.12e-63bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]