PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.006G175700.18.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 479aa MW: 52551.7 Da PI: 4.5839

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.006G175700.18.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.3	1e-06	398	426	4	35
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TT CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askaps 35 +h + r+RR+++N+ f L++l+P+ + Sobic.006G175700.18.p 398 NHIMSQRKRREKLNEMFLILKSLVPSvH----K 426 799999*******************944....2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.0E-51	22	208	IPR025610	Transcription factor MYC/MYB N-terminal
Gene3D	G3DSA:4.10.280.10	1.0E-5	397	427	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.02E-7	397	428	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.07E-7	397	436	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010026	Biological Process	trichome differentiation
GO:0010214	Biological Process	seed coat development
GO:2000029	Biological Process	regulation of proanthocyanidin biosynthetic process
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MAPSASPVQE GLQQAAERQL MRNQLAAAAR SINWTYAFFW SISSTQPGRR VLTWTDGFYN 60 GEVKTRKISS SVELTADQLV MQRSEQLREL YEALLSGECD RRPAPVRPVS SLSPEDLGDT 120 EWYYVVCMTY TFRPGQGLPG RSFASNEYVW LCNAHLAASK AFPRALLAKS ASIQSIVCIP 180 LMGGVLELGT TDTVPEDPDL ISRATAAFWE PQCPTYSEYP STNPSANETG EAADDDVVVF 240 EDLDPNAMDM ETMTAFGGHG QELGEAESLF NANLKYITKE FDEFYSLCEE MDMQQLEDDW 300 TMVNGSNFED PSSLQPAPPG ATTANVADTS STRADSSRAT SFMAWTRSSQ SYSDEVAAVS 360 VIEEPQKLLK KVVAGSGAWA NYGGRDTIGT FQQSGIKNHI MSQRKRREKL NEMFLILKSL 420 VPSVHKKNLD LKNSILCNTP LGTSKKDIMN NGGQSIDPRR NDSLPQGASA KDTRAGVQ*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MAPSASPVQE GLQQAAERQL MRNQLAAAAR SINWTYAFFW SISSTQPGRR VLTWTDGFYN  60
GEVKTRKISS SVELTADQLV MQRSEQLREL YEALLSGECD RRPAPVRPVS SLSPEDLGDT  120
EWYYVVCMTY TFRPGQGLPG RSFASNEYVW LCNAHLAASK AFPRALLAKS ASIQSIVCIP  180
LMGGVLELGT TDTVPEDPDL ISRATAAFWE PQCPTYSEYP STNPSANETG EAADDDVVVF  240
EDLDPNAMDM ETMTAFGGHG QELGEAESLF NANLKYITKE FDEFYSLCEE MDMQQLEDDW  300
TMVNGSNFED PSSLQPAPPG ATTANVADTS STRADSSRAT SFMAWTRSSQ SYSDEVAAVS  360
VIEEPQKLLK KVVAGSGAWA NYGGRDTIGT FQQSGIKNHI MSQRKRREKL NEMFLILKSL  420
VPSVHKKNLD LKNSILCNTP LGTSKKDIMN NGGQSIDPRR NDSLPQGASA KDTRAGVQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	2e-22	33	208	23	192	Transcription factor MYC3
4rqw_B	2e-22	33	208	23	192	Transcription factor MYC3
4rs9_A	2e-22	33	208	23	192	Transcription factor MYC3
4yz6_A	2e-22	33	208	23	192	Transcription factor MYC3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	403	408	RKRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.006G175700.18.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021318741.1	0.0	anthocyanin regulatory R-S protein isoform X2
Swissprot	P13027	0.0	ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBL	A0A1B6PMJ4	0.0	A0A1B6PMJ4_SORBI; Uncharacterized protein
STRING	Sb06g025060.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	8e-63	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sobic.006G175700.18.p

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Perrot GH,Cone KC Nucleotide sequence of the maize R-S gene. Nucleic Acids Res., 1989. 17(19): p. 8003 [PMID:2798145] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]