PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G175700.14.p | ||||||||
Common Name | Sb06g025060, SORBIDRAFT_06g025060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 589aa MW: 65219.5 Da PI: 5.0789 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.3 | 4.8e-12 | 398 | 444 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h + r+RR+++N+ f L++l+P+ K++Ka+iL +++ Y+k+Lq Sobic.006G175700.14.p 398 NHIMSQRKRREKLNEMFLILKSLVPSvH------KVDKASILAETIAYLKELQ 444 799999********************55......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.6E-51 | 22 | 208 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.072 | 394 | 443 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.80E-15 | 397 | 448 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-16 | 397 | 459 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-9 | 398 | 444 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-15 | 398 | 455 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.1E-13 | 400 | 449 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 589 aa Download sequence Send to blast |
MAPSASPVQE GLQQAAERQL MRNQLAAAAR SINWTYAFFW SISSTQPGRR VLTWTDGFYN 60 GEVKTRKISS SVELTADQLV MQRSEQLREL YEALLSGECD RRPAPVRPVS SLSPEDLGDT 120 EWYYVVCMTY TFRPGQGLPG RSFASNEYVW LCNAHLAASK AFPRALLAKS ASIQSIVCIP 180 LMGGVLELGT TDTVPEDPDL ISRATAAFWE PQCPTYSEYP STNPSANETG EAADDDVVVF 240 EDLDPNAMDM ETMTAFGGHG QELGEAESLF NANLKYITKE FDEFYSLCEE MDMQQLEDDW 300 TMVNGSNFED PSSLQPAPPG ATTANVADTS STRADSSRAT SFMAWTRSSQ SYSDEVAAVS 360 VIEEPQKLLK KVVAGSGAWA NYGGRDTIGT FQQSGIKNHI MSQRKRREKL NEMFLILKSL 420 VPSVHKVDKA SILAETIAYL KELQRRIQEL ESSRELTTHP SETTRSIKKT RGNGSVRKKP 480 YAGSKRKSPD DLEKKHEHPW ILPKDGTSNI TVTVGNTDVL LEVQCRWEEL LMTRVFDAIK 540 SLHLDVLSVQ DSAPDGFIGL KIRAQFVGSG AIMPWMISEA LRKAIGKR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 2e-21 | 33 | 204 | 62 | 227 | Transcription factor MYC3 |
4ywc_A | 2e-21 | 33 | 204 | 62 | 227 | Transcription factor MYC3 |
4ywc_B | 2e-21 | 33 | 204 | 62 | 227 | Transcription factor MYC3 |
5t0f_A | 1e-21 | 33 | 204 | 23 | 188 | Transcription factor MYC3 |
5t0q_A | 1e-21 | 33 | 204 | 23 | 188 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 403 | 408 | RKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G175700.14.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021318739.1 | 0.0 | anthocyanin regulatory R-S protein isoform X1 | ||||
Refseq | XP_021318740.1 | 0.0 | anthocyanin regulatory R-S protein isoform X1 | ||||
Swissprot | P13027 | 0.0 | ARRS_MAIZE; Anthocyanin regulatory R-S protein | ||||
TrEMBL | C5YDM3 | 0.0 | C5YDM3_SORBI; Uncharacterized protein | ||||
STRING | Sb06g025060.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP932 | 33 | 109 | Representative plant | OGRP2447 | 14 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 1e-61 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G175700.14.p |
Entrez Gene | 8056591 |
Publications ? help Back to Top | |||
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