PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G171500.2.p | ||||||||
Common Name | Sb06g024680, SORBIDRAFT_06g024680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 580aa MW: 61154.2 Da PI: 5.6639 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 108 | 124 | 3 | 19 |
ETTTTEEESSHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrH 19 C++Cgk F++++++ +H Sobic.006G171500.2.p 108 CKNCGKEFTSWELFLQH 124 ****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.23E-5 | 27 | 53 | No hit | No description |
SMART | SM00355 | 0.96 | 30 | 52 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.64 | 30 | 57 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.0021 | 31 | 52 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.8E-8 | 274 | 297 | No hit | No description |
Pfam | PF13912 | 1.4E-9 | 274 | 299 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.221 | 275 | 302 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 275 | 297 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 277 | 297 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.8E-8 | 397 | 424 | No hit | No description |
SMART | SM00355 | 3.7 | 402 | 424 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.182 | 402 | 424 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.9E-11 | 402 | 425 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 404 | 424 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 580 aa Download sequence Send to blast |
MCESLSSLMP PSPSPPQPSR PPGQSPEYKH FCRVCNKGFT CGSALGGHMR AHGASDVDGF 60 GADDDLLGDE ASTRCLAADQ WDTVGTSATH AYALRANPNR LIRSCQLCKN CGKEFTSWEL 120 FLQHGKCNSE DEEEEEEVDG LGSLRSPSPP SDADSEEDPT VAAAWSKGKR SRRVRAEETS 180 TVAPPERCTL GEEEDLANCL VMLSSYKSNS KQQTTITATD HHEPACASTK KGDGEPPLQV 240 QPISFFTQTQ ESVMALPSPV AMVPQYISPA SRGVFECKAC KKVFTSHQAL GGHRASHKKV 300 KGCFAAKFES NASEPTRHST VIDTNNGNGT SNGKATAVDE GNAGASTDAT RVFATTGVEA 360 NVGMSTEATS SLSMALLPIG HNPSAATTLA VAAQCKKNAK MHECSVCHRL FTSGQALGGH 420 KRCHWLTSNT SDPCNPVANV IPPLTEDLVG VVKHQLSLRP MVDAPEPVLD LTIAANPVAL 480 AASTARPEAT NSSFRLDVAP VHLPPLVVAV PGNVSHQKKD VATSSHATDA VAEEDEADST 540 TAKRAKISDL KDMVSMDGEP MEPWLQVGIG SSSAAGDDS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.6082 | 0.0 | pollen |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G171500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002446909.1 | 0.0 | uncharacterized protein LOC8083374 | ||||
TrEMBL | C5YDI3 | 0.0 | C5YDI3_SORBI; Uncharacterized protein | ||||
STRING | Sb06g024680.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3524 | 32 | 62 | Representative plant | OGRP2521 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03510.1 | 2e-16 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G171500.2.p |
Entrez Gene | 8083374 |