PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G126600.1.p
Common NameSb06g020670, SORBIDRAFT_06g020670
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 383aa    MW: 41888.6 Da    PI: 6.5301
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G126600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.62.6e-2647115270
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                           W ++e+l+Li++rrem+ +++++k++k+lWe++s++mr++gf rsp++C++kw+nl k++kk + ++++
  Sobic.006G126600.1.p  47 WVREETLCLIALRREMDAHFNTSKSNKHLWEAISARMRDQGFDRSPTMCTDKWRNLLKEFKKARSHSRN 115
                           ***************************************************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.51339103IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.2E-540105IPR009057Homeodomain-like
SMARTSM007179.8E-643105IPR001005SANT/Myb domain
CDDcd122032.10E-2745110No hitNo description
PfamPF138372.5E-1846140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MLLSGPPAAP TPPLLLPESS GEDGGHDSSS RAAAVAGSAP KRRAETWVRE ETLCLIALRR  60
EMDAHFNTSK SNKHLWEAIS ARMRDQGFDR SPTMCTDKWR NLLKEFKKAR SHSRNSGGGS  120
GSGAGGNGNA KMAYYKEIDD LLKRRGKATG SGSGGCVGSG AAGKSPTSNS KIESYLQFTT  180
DNGFDDANIP FGPVEANGRP ILSIDDRLED DRHPLPLTAA DAVATNGVNP WNWRDTSTNG  240
GDNHGSFGGR VILVKWGDYT KRIGIDGTPE AIKEAIKSAF GLRTRRAFWL EDEDEVVRAL  300
DRDMPVGTYT LNLDDGITIK LCDGNRMQTP EDKTFYTEED FRDFLLRRGW TFLREYGGYR  360
NVDSLDDLRP GVMYQGLRSL GD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A1e-3841137186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G126600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0555220.0BT055522.1 Zea mays full-length cDNA clone ZM_BFc0047D18 mRNA, complete cds.
GenBankKJ7279510.0KJ727951.1 Zea mays clone pUT6049 trihelix transcription factor (THX25) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446693.10.0trihelix transcription factor GT-1
SwissprotQ9FX531e-146TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLC5YAX30.0C5YAX3_SORBI; Uncharacterized protein
STRINGSb06g020670.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56313752
Representative plantOGRP59331318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-135Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]