PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G115700.2.p | ||||||||
Common Name | Sb06g019710, SORBIDRAFT_06g019710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 741aa MW: 78241 Da PI: 7.2622 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.3 | 1e-30 | 284 | 341 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +Dgy+WrKYGqK+vk se+prsY++Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k Sobic.006G115700.2.p 284 EDGYSWRKYGQKQVKHSEYPRSYFKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHPK 341 8****************************************.***************85 PP | |||||||
2 | WRKY | 104.6 | 5.3e-33 | 507 | 565 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe Sobic.006G115700.2.p 507 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCTVRKHVERASHDLKSVITTYEGKHNHE 565 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-27 | 278 | 342 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.274 | 278 | 342 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.98E-25 | 280 | 342 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-34 | 283 | 341 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-23 | 284 | 340 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.8E-37 | 492 | 567 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.06E-29 | 499 | 567 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.597 | 502 | 567 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-38 | 507 | 566 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.5E-25 | 508 | 565 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 741 aa Download sequence Send to blast |
MEGHVAMEWK DPKPGPESLM GFQTRGVRPD TVGGHSNEDA KPGFEKHGFS VDISSPQEEG 60 RSLPLTPQFG QKTSPGSSLA ERMQARAGFK VPKLNMPFST AAGADNSVPG APSPYLTIPP 120 GLSPATLLES PVFVSNAMGQ PSPTTGKLFM SGSTNDNDPI RFGGPPVGDG PDAFSFKPLD 180 LKSSHYTAEA MKEQNTQVSV KTKTKTQPVQ EANLLGQLNQ QNHNVQTNMN IGGPHDSKLS 240 RLASGTGACN EHVSPPDYGQ TAEEGGDARE DYPPAMAAAT APAEDGYSWR KYGQKQVKHS 300 EYPRSYFKCT HPNCQVKKKV ERSHEGHITE IIYKGAHNHP KPTPSRRPGV QVQPVHPFGD 360 AGGAQQADAA ADNNLGSQSQ QANAAAEANH QPWRAGVQDG MDAATSSPSV PGELCDSSAS 420 MQQVEYAPRG FGSPEGADVT SAPSDEVDGG DRVTLGSMSH AGADAEGDEL ESKRRKVEAY 480 AMDMSTASRA IREPRVVIQT TSEVDILDDG YRWRKYGQKV VKGNPNPRSY YKCTHPGCTV 540 RKHVERASHD LKSVITTYEG KHNHEVPAAR NSGGHPSTAA AATGAGGGGP RRPEHTSSVH 600 DGLMMRHLGG CGVPFGLPLQ PPSRDPLAPM GNYPTYPFTA LGGGGGSGGD GGLTSLPSLP 660 MATGNLSAVE GLKLPMLATS SPLHHQHPLL RHRQAMQAAA LAAAPMAQVK VEDNVAAGVT 720 AAPSVYQQMV RSGLRLGHQM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-36 | 284 | 568 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-36 | 284 | 568 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.20508 | 0.0 | pollen |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G115700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727736 | 0.0 | KJ727736.1 Zea mays clone pUT5677 WRKY transcription factor (WRKY59) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448017.2 | 0.0 | probable WRKY transcription factor 2 | ||||
Refseq | XP_021318305.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Swissprot | Q9FG77 | 1e-120 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A1B6PLI0 | 0.0 | A0A1B6PLI0_SORBI; Uncharacterized protein | ||||
STRING | Sb06g019710.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-111 | WRKY DNA-binding protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G115700.2.p |
Entrez Gene | 8058691 |
Publications ? help Back to Top | |||
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