PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G115400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 521aa    MW: 54741.5 Da    PI: 7.1968
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G115400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-05345367123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C  CgksF+++  L  H+ +H
  Sobic.006G115400.1.p 345 HTCLTCGKSFPTHQALGGHMANH 367
                           79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.7E-57599IPR007087Zinc finger, C2H2
PROSITE profilePS501578.6427597IPR007087Zinc finger, C2H2
SMARTSM003550.00447597IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.12E-77697No hitNo description
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-7340367No hitNo description
PfamPF139121.0E-7345367IPR007087Zinc finger, C2H2
PROSITE profilePS501579.265345372IPR007087Zinc finger, C2H2
SMARTSM003550.031345367IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280347367IPR007087Zinc finger, C2H2
PfamPF139123.0E-10455478IPR007087Zinc finger, C2H2
SMARTSM003550.59455477IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280457477IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MNSRAYQFQL QAAEAAAPVV HAAEGGETEV TTMAPPLLKI EAQGTAADEP ASRQGSGGLA  60
PTTMGTIVNA EALATKCPEC PKWFASEKAM FGHLRKHPER GYKGATRPTM ATASAAAAAA  120
VVGDKKPTKK VPRKQINMAA VAAAKAWEEG ELSTRWPASV KRGRTPVAPV QASSCSEEEE  180
AAMILLELAS SSRTSSETQQ QQSVEPARAP DAVSGYQIQT SVVEEPMLLD YPAGHQSPEA  240
AEQQIVQPEN ALALSAESQT PAVKQVTDLV ITTEAVLIVV PVNNKPIVFP SLDSGAAGDK  300
KATKKQRRVT NPEQTAASPP PPEGGAVVRT PPARRIPSPA SDKKHTCLTC GKSFPTHQAL  360
GGHMANHVKG SKTTSARHDD LAEAQAKRNI AELTHRDQSA GNGNVIIAAR AGEGAMQERQ  420
DAQPPPAQVQ APTPQDAKPP PAQAQAPTPK AAAPHVCDEC HLIFPSGQAL GGHKRKHWFP  480
EKQQAKAASA PAPAPALAPR DFDLNEMPME EQGENNNDQP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G115400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008671251.10.0uncharacterized protein LOC103648579
TrEMBLA0A1B6PLH90.0A0A1B6PLH9_SORBI; Uncharacterized protein
STRINGAC185655.3_FGP0050.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425
Representative plantOGRP1097248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.12e-11C2H2 family protein