PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G109850.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 647aa    MW: 69753.3 Da    PI: 7.4669
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G109850.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011120137320
                           ETTTTEEESSHHHHHHHH CS
               zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                           C  Cg++F+ ++ L+rH 
  Sobic.006G109850.1.p 120 CRVCGRRFRARDALVRHF 137
                           *****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.157118146IPR007087Zinc finger, C2H2
PROSITE patternPS000280120141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MPWRQIVILP RATSSLMLPP LSPLQRRLLA AGPKLLAPRF FRSFSSATAP AARKPTTAVA  60
VLWDLAASRP PSTIPLYDAA VRLHLAATSF GRLRLSAAFV HPSHRLPSRA AGSAATTHLC  120
RVCGRRFRAR DALVRHFDAI HAREHAKRVA RIDSARGGRR VRLAAALSLK LSKYEKAARE  180
LTAGAGTASP SDELGRAGVR VELSRTPAAS LREHAQLVLD EGSARCLMLV SDHEELTPLL  240
RVARERGVRS VVVGGESGLA RWADVGFSWA EVIAGKARKA APSVSGKWRD GDVLKGLEWR  300
YEEDDDEEEV VFEDSDDDGV EELARKAKGK PWWKLDSDDE DSSVGEVQTK CAVAARFRPA  360
RSKNASIPSH SAIMALSSPL RITGAKKSHD PVPVTNASVS AVATGRGGRH APPCCRAIHR  420
SATAHAPCSA KKAVTSPRDV VEHDLVHGPG HEERREHARR GAEAGAHGAV HAGPEHAGDH  480
EVPPPAPEVA EGGGEVRPVE LRLQLRAQQR AGERRGGREE ELQHQVHVRA VEHGHGVRGH  540
PRPVAPDGDE RGEERRLGRV RQQESGRERG AGCLLLLLLL LVLGLVPDLD GQRGARDEAH  600
EREGGVERPV SRGEEEELEA AEPDEEEGGD GAEVDGGEGE GEDWEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G109850.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9541310.0EU954131.1 Zea mays clone 1456437 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319279.10.0uncharacterized protein LOC110436487
TrEMBLA0A1Z5RDZ40.0A0A1Z5RDZ4_SORBI; Uncharacterized protein
STRINGPavir.J22986.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122342023
Representative plantOGRP1622422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.14e-36C2H2 family protein