PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.006G090700.2.p

Common Name

Sb06g017580, SORBIDRAFT_06g017580

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 675aa MW: 75672.9 Da PI: 6.7297

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.006G090700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.7	2.8e-16	60	156	1	89
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdg......kwevtkl 81 +fY+ +A+++GFs+r+++++ + + t+r fvC + g++ + + + + +r+++++r+gC+a +++ k d+ +w+v+ + Sobic.006G090700.2.p 60 EFYSGFARRCGFSIRRHRTEGKdGVGRGLTRRYFVCHRAGSAPAKPLAgAPRPQRNKSSSRCGCQAYMRIGKGADDaggplpEWRVMGF 148 6************9998877355667999******99888775677888999********9998432344458** PP FAR1 82 eleHnHel 89 +++HnH+l Sobic.006G090700.2.p 149 SNHHNHAL 156 ****99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-13	60	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.3E-19	280	371	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.939	556	592	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.5E-5	563	592	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.3E-4	567	594	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MTPAEPASLL ECDARGEDDS PDETRLSLET AAPSAGAGEG DSDAAPYVGQ RFPTHDAAYE 60 FYSGFARRCG FSIRRHRTEG KDGVGRGLTR RYFVCHRAGS APAKPLAGAP RPQRNKSSSR 120 CGCQAYMRIG KGADDAGGPL PEWRVMGFSN HHNHALLGQD KVRLLPAYRF ISGADRDRIL 180 MLAESGITVQ QMMRIMELEK CIEPGNLPFT EKDVRNLIQS RKVEHEEDES VDLLRMCKNF 240 KEKDPNFKFE FTKDASNHVE NIAWTYADSV QSYELFGDAV VFDTTHRLSA LDMVLGIWVG 300 LNNYGRPFFF ACVLLREENQ ISFGWALQVF LNFMNRKAPQ TILTDQNVCL KEAIEKELPS 360 TKHVLCKWLI AARFPSWFGA NLGERYKDWK NEFDRLYNMD STVAFDLGWN DMVNCYGLHG 420 NGHIGSLFAS RNLWALPYLR GYFTAGLITS PAVSKSTNAF IQQFLSAQTH LANFIEQVSI 480 IVTYKDQAGE QEMMQQNLQS ISLKTTSPIE GHAAAILTPY AFSKLQDELV ASAQYASFHL 540 EGSIFLVCHH TEEGGCSVTW NQREELISCC CQMFESSGIL CRHALHVLTA LNYFQIPDLY 600 LPVRWRWTQP PLSNSLNGAP HHPQGVASER VGALQSMVSA LVSEATKSHE RMDLATQEVY 660 LLLSKIKQQP VSFR*

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MTPAEPASLL ECDARGEDDS PDETRLSLET AAPSAGAGEG DSDAAPYVGQ RFPTHDAAYE  60
FYSGFARRCG FSIRRHRTEG KDGVGRGLTR RYFVCHRAGS APAKPLAGAP RPQRNKSSSR  120
CGCQAYMRIG KGADDAGGPL PEWRVMGFSN HHNHALLGQD KVRLLPAYRF ISGADRDRIL  180
MLAESGITVQ QMMRIMELEK CIEPGNLPFT EKDVRNLIQS RKVEHEEDES VDLLRMCKNF  240
KEKDPNFKFE FTKDASNHVE NIAWTYADSV QSYELFGDAV VFDTTHRLSA LDMVLGIWVG  300
LNNYGRPFFF ACVLLREENQ ISFGWALQVF LNFMNRKAPQ TILTDQNVCL KEAIEKELPS  360
TKHVLCKWLI AARFPSWFGA NLGERYKDWK NEFDRLYNMD STVAFDLGWN DMVNCYGLHG  420
NGHIGSLFAS RNLWALPYLR GYFTAGLITS PAVSKSTNAF IQQFLSAQTH LANFIEQVSI  480
IVTYKDQAGE QEMMQQNLQS ISLKTTSPIE GHAAAILTPY AFSKLQDELV ASAQYASFHL  540
EGSIFLVCHH TEEGGCSVTW NQREELISCC CQMFESSGIL CRHALHVLTA LNYFQIPDLY  600
LPVRWRWTQP PLSNSLNGAP HHPQGVASER VGALQSMVSA LVSEATKSHE RMDLATQEVY  660
LLLSKIKQQP VSFR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.006G090700.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002446529.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	C5Y8V9	0.0	C5Y8V9_SORBI; Uncharacterized protein
STRING	Sb06g017580.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Sobic.006G090700.2.p
Entrez Gene	8080344

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]