PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G086000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 206aa MW: 22525.9 Da PI: 5.025 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.6 | 1.2e-32 | 10 | 129 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGf+F P+deelvv++L++k++ +++ +++++v +++++Pw+L+ k+ + ++wyfFs++++ +r+t +gyW++ d Sobic.006G086000.1.p 10 LPPGFHFFPSDEELVVHFLRRKASLLPCQP-DIVPTVCMNHYDPWELNGKALGAGNQWYFFSHAKH--------SRVTPNGYWSSVCAD 89 79*************************999.89**************977677889******9754........799************ PP NAM 90 kevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 ++v s +g vglkktLvf +g ++++g++t+W+mhey+l Sobic.006G086000.1.p 90 ETVSS-GGCSVGLKKTLVFSTGepSESEGTETNWIMHEYHL 129 ***99.99************8755788999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.11E-41 | 7 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.51 | 10 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-22 | 11 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MGGASNSNLL PPGFHFFPSD EELVVHFLRR KASLLPCQPD IVPTVCMNHY DPWELNGKAL 60 GAGNQWYFFS HAKHSRVTPN GYWSSVCADE TVSSGGCSVG LKKTLVFSTG EPSESEGTET 120 NWIMHEYHLL DGRKGISSST TSTNSSSKKL HHPNTESNNW VICRVFDSTT GGSQASCHEE 180 GMELSCLDEV FLSLDDYDEV SLSNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-34 | 10 | 174 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-34 | 10 | 174 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-34 | 10 | 174 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-34 | 10 | 174 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-34 | 10 | 174 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-34 | 10 | 174 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-34 | 10 | 174 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-34 | 10 | 174 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-34 | 10 | 174 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-34 | 10 | 174 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-34 | 10 | 174 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-34 | 10 | 174 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-34 | 10 | 174 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-34 | 10 | 174 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.7243 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G086000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063557 | 1e-41 | BT063557.1 Zea mays full-length cDNA clone ZM_BFc0077D21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021318322.1 | 1e-152 | NAC domain-containing protein 104-like | ||||
Swissprot | Q8GWK6 | 8e-63 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A1B6PL13 | 1e-150 | A0A1B6PL13_SORBI; Uncharacterized protein | ||||
STRING | Sb06g017190.1 | 1e-151 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3667 | 36 | 79 | Representative plant | OGRP4510 | 10 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-60 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G086000.1.p |
Publications ? help Back to Top | |||
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