PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G076900.9.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 428aa    MW: 46749.1 Da    PI: 5.2552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G076900.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.7e-13231278355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           ++h + Er+RR+++N+ f  L+ l+P+      +K++K++iL +++ Y+k+Lq
  Sobic.006G076900.9.p 231 KNHVMSERKRREKLNEMFLILKLLVPSI-----QKVDKVSILAETIAYLKELQ 278
                           5899***********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.8E-9343IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.574228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-18231299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.35E-16231282No hitNo description
PfamPF000102.6E-10232278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-17232293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-15234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MVKQSASIQL IVCIPVMGGV LELGTTNRVP EDPGLVSRAT AAFWESQCPT YSEEPSSNPS  60
ANEAGETADI VVFEDLGHNA MVETMTATGG HGQELGEAEG LSNASLEHMT KEMDEFYSLF  120
EEMDVQPLPL EDSWIMLDGS NNFEVPSPPL GARATTNNVA DTSSAPVDGS RATCFMPWTT  180
RPSRSYSDEA AAVPAVEEPQ KLLKKVVSGG RAWANCGVGG TVRTAQESGI KNHVMSERKR  240
REKLNEMFLI LKLLVPSIQK VDKVSILAET IAYLKELQRK VQELKSSREL LSRPSETTAR  300
PTKPCGIGSE SVRKKLSAGS KRKSPDFSGD VEKEHPWVLP KDGTSNVTVA VSDRDVLLEV  360
QCRWEELLMT RVFDSIKGLH LDVLSVQASA PDGFMGLKIR AKLFLFNFFA VCRLQCRRAL  420
DDQRGSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241ERKRRE
2237242RKRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G076900.9.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankSBU114511e-180U11451.1 Sorghum bicolor clone sor63 myc-like regulatory R gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318214.10.0anthocyanin regulatory R-S protein
SwissprotP130271e-161ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLA0A1Z5RCR70.0A0A1Z5RCR7_SORBI; Uncharacterized protein
STRINGSb06g016380.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-30bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]