PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G049900.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 654aa    MW: 73583.8 Da    PI: 8.9344
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G049900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.2e-07595638243
                           SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                           ++WT+   + l++a k ++++   +W+++a+ ++ g+t  qck +
  Sobic.006G049900.1.p 595 DAWTEAQVLALLQALKAFPKDasqRWERVAAAVP-GKTVVQCKKK 638
                           58********************************.********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.7E-2091174IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1103.4E-2192198IPR001623DnaJ domain
SMARTSM002713.7E-1595170IPR001623DnaJ domain
PfamPF002264.9E-1896175IPR001623DnaJ domain
PROSITE profilePS5007618.50196178IPR001623DnaJ domain
CDDcd062571.58E-1296167IPR001623DnaJ domain
PRINTSPR006255.1E-8101119IPR001623DnaJ domain
PRINTSPR006255.1E-8119134IPR001623DnaJ domain
PRINTSPR006255.1E-8150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.075463518IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.9E-4465509IPR009057Homeodomain-like
SuperFamilySSF466893.89E-7465511IPR009057Homeodomain-like
SMARTSM007179.9E-6467520IPR001005SANT/Myb domain
CDDcd001671.60E-4470510No hitNo description
SMARTSM007174.7E-5593645IPR001005SANT/Myb domain
SuperFamilySSF466895.16E-8594638IPR009057Homeodomain-like
PfamPF002497.8E-6596638IPR001005SANT/Myb domain
CDDcd001673.35E-5596638No hitNo description
Gene3DG3DSA:1.10.10.603.6E-4596638IPR009057Homeodomain-like
PROSITE profilePS500906.168597638IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MESQKCFLIT YSQEIVDGVP LYVSSNCLPV KALKYEPAGH SFHAAAMKLL GLAEHEDIET  60
DDRSVSSDDK SQDFNAGSHT FSSKGKKKSS GSQQQDHYAL LGLGHLRFLA TEDQIRKSYR  120
DMALKHHPDK QAALILAETT EEAKQAKKDE IESHFKAIQE AYEILIDPTK RRIYDSTDEF  180
DDDVPTDCAP QDFFKVFGPA FMRNGRWSVT QPIPSLGHDT TPVEEVDKFY NFWYNFKSWR  240
EFPDDDEYDL EQAESREHKR WMERQNAKLQ EKAKKAEYAR VRTLVDNAYK KDPRIQRRKE  300
EEKAEKQRRK EAKYLAKKLQ EEEAARAGEV ERIRKEEESK KAAEAALHQK KLKEKEKKLL  360
RKEKTRLRIL AAPVVADSHF GLSEANVEST CASLDMEQLK KLCDGMDGKD AAEKARLLSN  420
ALRNESSSKE AKKIEANGVE RSAPKSNSTG GRVTEGSSSI LNSYEKKERP WGKEEIEMLR  480
KAIQKYPKGT SRRWEVVSEF IGTSRSVEEI LKATKTVLLQ KPDSSKAFDS FLEKRKPTQS  540
IASPLSTRDE ISSSTEGAET ALSKAAAQPA STQTANGKAV ADPVPDGAPS VSDPDAWTEA  600
QVLALLQALK AFPKDASQRW ERVAAAVPGK TVVQCKKKVA ARRENFRSKK SGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1919229620124Zuotin
5dje_B1e-1919229620124Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G049900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9468800.0EU946880.1 Zea mays clone 324537 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319127.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_021319128.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_021319129.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_021319130.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A1B6PK990.0A0A1B6PK99_SORBI; Uncharacterized protein
STRINGSb06g013250.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Representative plantOGRP38231521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain