PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G035700.1.p
Common NameSb06g004760, SORBIDRAFT_06g004760
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARR-B
Protein Properties Length: 383aa    MW: 43263.2 Da    PI: 6.4529
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G035700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like482.7e-15165215355
               G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            l Wtp L ++F++ave LG  e AtPk+i  lm+v+++ ++++  HLQk+R 
  Sobic.006G035700.1.p 165 HLMWTPFLQRKFLQAVELLG--EAATPKKIQFLMNVNSVGRKQISAHLQKHRK 215
                           689****************4..67***************************96 PP
2Response_reg40.31.7e-14161231107
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                           v++vd++   ++    +l + ++ +v +  ++ +al+ lk+++   D  l+ ++m +m+G+++l + re +++l++i+++a  + ++++
  Sobic.006G035700.1.p  16 VIVVDENLCHANTTSCMLANLQF-QVVVYVSPVDALKFLKDHErdTDFALVEVNMKEMHGFQFLDRSRELHKNLQVIMMSADTTWPMMK 103
                           6788888888888888999****.999999*********877777******************************************** PP

                           HHHHTTESEEEESS--HHHH CS
          Response_reg  88 ealkaGakdflsKpfdpeel 107
                           + +++Ga+  + Kp d + +
  Sobic.006G035700.1.p 104 RSVELGARFLIKKPLDANTI 123
                           **************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.42E-2013130IPR011006CheY-like superfamily
SMARTSM004481.0E-614127IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.4E-2014133No hitNo description
PROSITE profilePS5011024.00715131IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-1316123IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.56E-1117123No hitNo description
Gene3DG3DSA:1.10.10.601.1E-14160219IPR009057Homeodomain-like
SuperFamilySSF466894.3E-9162219IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-15165216IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGTQVIGERT SGDLSVIVVD ENLCHANTTS CMLANLQFQV VVYVSPVDAL KFLKDHERDT  60
DFALVEVNMK EMHGFQFLDR SRELHKNLQV IMMSADTTWP MMKRSVELGA RFLIKKPLDA  120
NTIDNLWQHL DLKFQRTDKI KDLFPGIEGK MGNAFGEGTK HKASHLMWTP FLQRKFLQAV  180
ELLGEAATPK KIQFLMNVNS VGRKQISAHL QKHRKKIEKQ LHNSNGNKSS NGAPNSQPLR  240
ICGIGHNTFQ YIPDIQPEHK SDEVVSLEYK EIIEETQSNM LYEAMRRALQ LGTIFEESQL  300
PIVPSGKDTR KVNVDMMRDG NYRDAGTYAF GDKNEVSETQ NADDNAKVMS KDDSHKMDSC  360
GDELRPVVTL VTYSDSEDGE TL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G035700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9437540.0EU943754.1 Zea mays clone 1685039 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669569.10.0two-component response regulator ORR29 isoform X1
TrEMBLC5YDN80.0C5YDN8_SORBI; Uncharacterized protein
STRINGSb06g004760.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Representative plantOGRP1117845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.12e-19response regulator 10