PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G025000.2.p
Common NameSb06g002260, SORBIDRAFT_06g002260
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TCP
Protein Properties Length: 178aa    MW: 18197.4 Da    PI: 8.9137
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G025000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.12e-3158134881
                   TCP   8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssss 81 
                           + ++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++     ++ss+ +
  Sobic.006G025000.2.p  58 SVDRHAKVAGRGRRVRIPAMVAARVFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGVTTEEAPsvlVPVSSVAA 134
                           569*******************************************************5554422212333333322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-2757137IPR005333Transcription factor, TCP
PROSITE profilePS5136925.0558112IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MSSSSELYNL VPAPQTLNPP APAAADLSSS TAVAAAAAAA PGDGALRGRV RRPVGSSSVD  60
RHAKVAGRGR RVRIPAMVAA RVFQLTRELG HRSDGETIEW LLRQAEPSII AATGTGVTTE  120
EAPSVLVPVS SVAATASMTP VSYSYYTALL MQPPTAKESP PASAYVSGTA AEENNNN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269|PubMed:9338963}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G025000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269991e-118KJ726999.1 Zea mays clone pUT3971 TCP transcription factor (TCP40) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446141.11e-122transcription factor PCF1
SwissprotO238753e-52PCF1_ORYSJ; Transcription factor PCF1
TrEMBLC5YCQ51e-120C5YCQ5_SORBI; Uncharacterized protein
STRINGSb06g002260.11e-121(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141722627
Representative plantOGRP9221459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.16e-25TCP family protein