PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.005G231700.3.p | ||||||||
Common Name | Sb05g027890, SORBIDRAFT_05g027890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 309aa MW: 32818.1 Da PI: 6.5828 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Sobic.005G231700.3.p 71 YSCTFCQREFRSAQALGGHMNVH 93 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.66E-6 | 68 | 98 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 69 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0053 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.198 | 71 | 98 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence Send to blast |
MNSSTATAMD QTGKYWGMWG ASSSSSTSTA SPISAWAAAY GGSSEPSWEE QAFARDAAAH 60 LGGCVWPPRS YSCTFCQREF RSAQALGGHM NVHRRDRALL RQGGSSSPDD VHAPNDDQSH 120 PQQGALLYRA AAASNPSTTT TPTTTTAAAG TTTAGSAAAM GQDGDANTTT PTSYLSTIIK 180 ESKNKLFMPI PDHSVAEMRE DQAAIDDHQC DRHDDGDSVQ SARKKRRRLD HPLAAAAALL 240 IFVQPTAKAA TDVSQEGRAD HETKVPQMTT PTSPSSISPL LDQRQELDLE LRLGTTPKVT 300 YMAIHKAS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 7e-13 | 66 | 93 | 2 | 29 | superman protein |
2l1o_A | 7e-13 | 66 | 93 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 224 | 228 | KRRRL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.005G231700.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT038716 | 0.0 | BT038716.1 Zea mays full-length cDNA clone ZM_BFb0313F12 mRNA, complete cds. | |||
GenBank | EU972109 | 0.0 | EU972109.1 Zea mays clone 375181 zinc finger, C2H2 type family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002451330.1 | 0.0 | zinc finger protein 10 | ||||
Refseq | XP_021316699.1 | 0.0 | zinc finger protein 10 | ||||
TrEMBL | C5Y1T7 | 0.0 | C5Y1T7_SORBI; Uncharacterized protein | ||||
STRING | Sb05g027890.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37740.1 | 2e-24 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.005G231700.3.p |
Entrez Gene | 8086042 |