PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G231700.2.p
Common NameSb05g027890, SORBIDRAFT_05g027890
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 309aa    MW: 32818.1 Da    PI: 6.5828
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G231700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000177193123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C+ C + F++   L  H+++H
  Sobic.005G231700.2.p 71 YSCTFCQREFRSAQALGGHMNVH 93
                          99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.66E-66898No hitNo description
Gene3DG3DSA:3.30.160.600.0016996IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00537193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1987198IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MNSSTATAMD QTGKYWGMWG ASSSSSTSTA SPISAWAAAY GGSSEPSWEE QAFARDAAAH  60
LGGCVWPPRS YSCTFCQREF RSAQALGGHM NVHRRDRALL RQGGSSSPDD VHAPNDDQSH  120
PQQGALLYRA AAASNPSTTT TPTTTTAAAG TTTAGSAAAM GQDGDANTTT PTSYLSTIIK  180
ESKNKLFMPI PDHSVAEMRE DQAAIDDHQC DRHDDGDSVQ SARKKRRRLD HPLAAAAALL  240
IFVQPTAKAA TDVSQEGRAD HETKVPQMTT PTSPSSISPL LDQRQELDLE LRLGTTPKVT  300
YMAIHKAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A7e-136693229superman protein
2l1o_A7e-136693229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224228KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G231700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0387160.0BT038716.1 Zea mays full-length cDNA clone ZM_BFb0313F12 mRNA, complete cds.
GenBankEU9721090.0EU972109.1 Zea mays clone 375181 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451330.10.0zinc finger protein 10
RefseqXP_021316699.10.0zinc finger protein 10
TrEMBLC5Y1T70.0C5Y1T7_SORBI; Uncharacterized protein
STRINGSb05g027890.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-24zinc-finger protein 10