PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G121100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 393aa    MW: 44038.5 Da    PI: 7.7937
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G121100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00058194216223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +C+ C+++++++ +L  H +  H
  Sobic.005G121100.1.p 194 SCSVCSRVYPTSRLLSIHVSEaH 216
                           6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003558.6166191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168191IPR007087Zinc finger, C2H2
SMARTSM003555.4193216IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280195216IPR007087Zinc finger, C2H2
SMARTSM003550.34231256IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280233256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MVPSNLFFPS ARAAHERIGH TPTRARRETP SLSSPLLSSP AFCLPHCEFE FEFELEPDSS  60
PLSLSLSSLP HAASGGPVRT ARIDRMQQKP DDAMEEAAAA PKAAAVTAGP ELGFWLAARR  120
RLAPDDPFFA AGDLERELLA KHLALDLSED DRDQLEKMEV ASTCTVFCPI AGCGAHLDCL  180
EEFEDHYVTR HTASCSVCSR VYPTSRLLSI HVSEAHDSYF QAKVARGFPM YECLVEGCGM  240
KLKSYKSRLQ HLIDKHQFPK SFEFFKKARA SQRQRQKSQR RQTAHKGEET RDNSMDVDGK  300
GARQTNQRYR QKQHDHNELK ESKQQHKEAK ENEMEVEQKI DELTSAVSKL STADSTPAKV  360
TFGHRRSRGL TFVPRSIRQN KQAASQLEAT ND*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G121100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9594940.0EU959494.1 Zea mays clone 218341 zinc finger protein 511 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449527.20.0LOW QUALITY PROTEIN: zinc finger protein 511
TrEMBLA0A1Z5RIA50.0A0A1Z5RIA5_SORBI; Uncharacterized protein
STRINGSb05g017930.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Representative plantOGRP75381313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-89zinc ion binding;nucleic acid binding;zinc ion binding