PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G111700.1.p
Common NameSb05g013190, SORBIDRAFT_05g013190
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 447aa    MW: 48069.1 Da    PI: 8.51
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G111700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38.1e-116083326
                          S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                          ++ C++++rtG C++G +CkF+H+
  Sobic.005G111700.1.p 60 EPDCSYYMRTGMCRFGMTCKFNHP 83
                          789********************8 PP
2zf-CCCH38.81.6e-12105129327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           +++C+++++tGtCk+G++CkF+H++
  Sobic.005G111700.1.p 105 QPECQYYLKTGTCKFGATCKFHHPR 129
                           799********************96 PP
3zf-CCCH35.91.2e-11152175427
                           ---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                           ++C +++rtG+Ck+G++CkF+H++
  Sobic.005G111700.1.p 152 KECAYYLRTGQCKFGSTCKFHHPQ 175
                           68********************97 PP
4zf-CCCH39.21.1e-12312337227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C+f+++tG Ck+G+ CkF+H++
  Sobic.005G111700.1.p 312 DQPECQFYMKTGDCKFGAVCKFHHPR 337
                           689*********************96 PP
5zf-CCCH36.48.6e-12357383127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C+f+ r+G Ck+G++CkF H++
  Sobic.005G111700.1.p 357 PGEPICSFYNRYGMCKFGPNCKFDHPM 383
                           5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-45784IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2535785IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-76083IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-56285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-46384IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6102129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244102130IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10105129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6105131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5108130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-6148177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99148176IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5150175IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9152175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4154174IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5310337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53310338IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9312337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5313339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4316338IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-7356383IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.291356384IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-8358383IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6360384IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4361381IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MAAPSGGGGG GAGEGSSSAA AAATIGAHGV DQVAEAMWQM NLGETMAPME LGPYPERVGE  60
PDCSYYMRTG MCRFGMTCKF NHPADRKLAV AAARMKGEYP QRIGQPECQY YLKTGTCKFG  120
ATCKFHHPRE KAAMATRVQL NELGYPLRAN EKECAYYLRT GQCKFGSTCK FHHPQPSTMM  180
VAVRGSVYSP GQSATSPGQH AYQGAVTSWP LSRSASFIAS PRWPGHSSYA QVIVPPGLVQ  240
VPGWSPYTAQ IGSSSSDDQQ RTPGAAQYYT GSRQSGTAGI GDQGMFSSYQ AGSVPVGLYA  300
VQRENVFPER PDQPECQFYM KTGDCKFGAV CKFHHPRERI IPTPNCALSP LGLPLRPGEP  360
ICSFYNRYGM CKFGPNCKFD HPMGSAMYGH ASSPTSEAPT SLRMLAHVPS HPEVSPDSGS  420
GRSRRIAHSD SQQIPSVERS TEREAS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.79970.0embryo| leaf| panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G111700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341780.0BT034178.1 Zea mays full-length cDNA clone ZM_BFc0032H13 mRNA, complete cds.
GenBankBT0608430.0BT060843.1 Zea mays full-length cDNA clone ZM_BFb0059K13 mRNA, complete cds.
GenBankBT0642190.0BT064219.1 Zea mays full-length cDNA clone ZM_BFc0149L04 mRNA, complete cds.
GenBankBT0857450.0BT085745.1 Zea mays full-length cDNA clone ZM_BFc0056E16 mRNA, complete cds.
GenBankEU9569840.0EU956984.1 Zea mays clone 1579587 zinc finger CCCH type domain-containing protein ZFN-like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450713.10.0zinc finger CCCH domain-containing protein 63
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A1Z5RII60.0A0A1Z5RII6_SORBI; Uncharacterized protein
STRINGSb05g013190.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-155zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]