PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G103000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 291aa    MW: 31067.6 Da    PI: 5.8186
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G103000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.6e-16111158555
                   AP2   5 GVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           GVr ++ +g+++AeIrd    + k +r++lg+f+t+e Aa a+++a+ + +g
  Sobic.005G103000.1.p 111 GVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFDTPEAAALAYDQAAFAARG 158
                           9*****.**********32..2.24**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.351108166IPR001471AP2/ERF domain
PRINTSPR003671.1E-7109120IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-20109168IPR016177DNA-binding domain
PfamPF008474.1E-12110158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-27111167IPR001471AP2/ERF domain
SMARTSM003804.9E-29111172IPR001471AP2/ERF domain
CDDcd000181.37E-13111143No hitNo description
PRINTSPR003671.1E-7132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEQQSYCYDL PTTTLSSAPP AFDTTTTDDS DMLLQLEAFL LGTDDAEAEA EPTTEVVSSD  60
WSSSSSSSSS SAPTFPEVGL GAVARTTANT RGNGNQHRGT EDKRRRQALI GVRKRPWGKF  120
AAEIRDSTRK GARVWLGTFD TPEAAALAYD QAAFAARGAA AVLNFPVERV VESLGALQLP  180
LPGTGGGSPV LALKRRHSKR TRRRKVVVSP GTVIDVSNNT TKAAARLQQP VQQCSDASSS  240
IMAVASSSSS MPEQRLVPSQ CHRGGVVELE DLGDDYMQEL LRISSELNYC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-241111681774Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G103000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276837e-90KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317667.10.0ethylene-responsive transcription factor ERF094
TrEMBLA0A1B6PRH10.0A0A1B6PRH1_SORBI; Uncharacterized protein
STRINGSb05g009150.12e-60(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.11e-21ethylene-responsive element binding factor 15