PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G046100.1.p
Common NameSb05g003810, SORBIDRAFT_05g003810
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 341aa    MW: 36571.5 Da    PI: 6.516
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G046100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1331.3e-10181239563
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           kr++r   NR +A rs +RK +++ eLe+kv++L++e ++L  +l  l+   + l++e+
  Sobic.005G046100.1.p 181 KRAKRILANRQSAARSKERKIKYTSELERKVQTLQTEATTLSAQLTLLQRDTSGLTTEN 239
                           9**********************************************999888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-15177241IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.013179242IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.0E-11181235No hitNo description
SuperFamilySSF579591.13E-10181232No hitNo description
PfamPF001702.4E-9181239IPR004827Basic-leucine zipper domain
CDDcd147032.97E-24182231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDPRFPPPAP SSCFGGGGGL LPARGHHRRA HSETFIRLPD DDLLLDADAD FGFSDIDFPS  60
LSDDSPAASD PTPQPQPQAP PPQQPMPQQQ AASSAPPRPP SGAHMRSLSL DAAFFDSLSL  120
QGGGGGGGGG GVVGHKRSGS MDGSSSSFEG ESAPSSSVFP DYAKKAVPDD KLAELALLDP  180
KRAKRILANR QSAARSKERK IKYTSELERK VQTLQTEATT LSAQLTLLQR DTSGLTTENR  240
ELKLRLQAME EQAKLRDALN DALREEVQRL KIAVGQVPNM NGNPFNGGLP QQQQMPSYFS  300
QQQQMQYFGS HQGQHHNPNH HPQNSSNGGG QSLSDSMDFM *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.153140.0callus| embryo| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G046100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0414870.0BT041487.1 Zea mays full-length cDNA clone ZM_BFc0033F19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449035.10.0transcription factor VIP1
TrEMBLC5Y5590.0C5Y559_SORBI; Uncharacterized protein
STRINGSb05g003810.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19253892
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.18e-44VIRE2-interacting protein 1