PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G045200.3.p | ||||||||
Common Name | Sb05g003750, SORBIDRAFT_05g003750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | TALE | ||||||||
Protein Properties | Length: 691aa MW: 71661.2 Da PI: 6.6325 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.8 | 2e-09 | 385 | 422 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Sobic.005G045200.3.p 385 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 422 664459******************************88 PP | |||||||
2 | BELL | 116.5 | 1.3e-37 | 245 | 316 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kL+++l+eV++rY+qy+ q+q+v ssFea+ag gsa+ Yt+lAl++iSr+FrcL+daia+q+ Sobic.005G045200.3.p 245 ERQELQMKKSKLINMLDEVEQRYRQYHGQMQAVSSSFEAAAGAGSARTYTALALRTISRQFRCLRDAIASQV 316 79********************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.1E-60 | 168 | 314 | IPR006563 | POX domain |
Pfam | PF07526 | 3.3E-49 | 173 | 313 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.969 | 363 | 426 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.84E-13 | 366 | 427 | No hit | No description |
SMART | SM00389 | 1.2E-9 | 366 | 430 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.15E-17 | 368 | 432 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.1E-29 | 369 | 432 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.7E-18 | 383 | 422 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 691 aa Download sequence Send to blast |
MAAYYHGGAG TDIQASTDGL QTLYLMNPSY AGYADDGGAS TAPGATNMML LNSAVTTMTP 60 ASFAHHHQQQ QSPSSAAHHQ QQQHFVGIPL QAPPSGYNLW TPATVAADMS MSSPTQAQTP 120 GGAAAGGVSA VLSLSSREAA PPPVTVAAVA GPGCTDEAGK YHLGVSATSQ GQMVMSSKYL 180 KAAQELLDEV VSVSKGVEDA NKTTTKSLAA VKKKEDSEGV SGGGTEDGSG AKSGGSGAAE 240 MSTAERQELQ MKKSKLINML DEVEQRYRQY HGQMQAVSSS FEAAAGAGSA RTYTALALRT 300 ISRQFRCLRD AIASQVRAAS RALGEDADAA VAAGGRTVGS RLRYIDHQLR QQRALQQLGM 360 MQGGAWRPQR GLPERSVSIL RAWLFEHFLH PYPKDSDKIM LAKQTGLTRS QVSNWFINAR 420 VRLWKPMVEE MYLEETKDQD GGGNDEGKSG GGGSKSGDTV DGVTPRADAM SSKSAVVRVG 480 GGGGAAESAS TNKGIHGSSL LELGGGGDHQ QSHAGFYDDD EDDGDDAMGR RLKKARGDEP 540 PAPAFHHVHD MAALHAQAAA AARQQHEEVS HRELLMKFME SGGGGGAGAR DHHHHHDGGG 600 YSLFAPGPYG QFAAEPAAFA FAGNGGVSLT LGLPHGAAGG SAAEQTASFL MGSTTAGADS 660 GSHGAGAGGY DMNMQSTKSF AAQLMRDFVA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 3e-17 | 372 | 430 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 3e-17 | 372 | 430 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 2e-17 | 372 | 430 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 2e-17 | 372 | 430 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.13375 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G045200.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086092 | 0.0 | BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450321.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_021317176.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_021317177.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_021317178.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-106 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | C5Y550 | 0.0 | C5Y550_SORBI; Uncharacterized protein | ||||
STRING | Sb05g003750.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 9e-73 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G045200.3.p |
Entrez Gene | 8070661 |
Publications ? help Back to Top | |||
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