PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.005G042200.1.p

Common Name

Sb05g003490, SORBIDRAFT_05g003490

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

WOX

Protein Properties

Length: 261aa MW: 27584.7 Da PI: 8.1649

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.005G042200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.3	8.3e-21	6	66	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee++++ r+p+a+e+++++++l +++ ++V++WFqN++a+e++ Sobic.005G042200.1.p 6 STRWCPTPEQLMILEEMYRSgVRTPNAAEIQQITAHLayygRIEGKNVFYWFQNHKARERQ 66 58***************99************************************97 PP
2	Wus_type_Homeobox	121	4.9e-39	5	67	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+PtpeQ++iLee+y+sG+rtPn++eiq+ita+L+ yG+ie+kNVfyWFQN+kaRerq+ Sobic.005G042200.1.p 5 PSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQR 67 689***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.463	2	67	IPR001356	Homeobox domain
SMART	SM00389	6.8E-6	4	71	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.33E-11	4	70	IPR009057	Homeodomain-like
CDD	cd00086	2.50E-4	5	60	No hit	No description
Pfam	PF00046	1.8E-18	6	66	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-7	8	66	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAEIQQITA HLAYYGRIEG KNVFYWFQNH 60 KARERQRLRR RLCARHQQQY AQQQQQQATA AAPSSSPLPS PAAGGSSAGV HPAVMQLHQH 120 HHPYATNFVP HLGYLGQQAA TVPPVLNPAA AGMVDLAAAG AGAGNKATGA GGGYGGGAAL 180 YNSCSSNQLE EWDPAEAMEH CNASCGAASG SSDEGGAAHL QLPPCCRRPL KTLDLFPTKS 240 TGLKDECSSS KSSSCSTSTN *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in tissues enriched for shoot meristems and young lateral organ primordia. First expressed in lateral domains of shoot meristems. It is then expressed in the margins of young lateral organ primordia. Not expressed in roots, seedling leaves or fully expanded coleoptiles. Also expressed in vegetative shoot apices (five leaf primordia and the SAM) and in the male inflorescence. Expressed at low level in the female inflorescence. {ECO:0000269\|PubMed:15169755}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in leaf formation. {ECO:0000269\|PubMed:15169755}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.005G042200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ536578	0.0	AJ536578.1 Zea mays mRNA for homeodomain transcription factor (prs gene).
GenBank	BT066120	0.0	BT066120.1 Zea mays full-length cDNA clone ZM_BFb0350F05 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002449019.1	0.0	WUSCHEL-related homeobox 3B
Swissprot	Q70UV1	1e-124	WOX3A_MAIZE; WUSCHEL-related homeobox 3A
TrEMBL	A0A1Z5RGL8	0.0	A0A1Z5RGL8_SORBI; Uncharacterized protein
STRING	Sb05g003490.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2177	38	97
Representative plant	OGRP5580	11	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	3e-34	WOX family protein

Link Out ? help Back to Top
Phytozome	Sobic.005G042200.1.p
Entrez Gene	8058565

Publications ? help Back to Top
Scanlon MJ NARROW SHEATH1 functions from two meristematic foci during founder-cell recruitment in maize leaf development. Development, 2000. 127(21): p. 4573-85 [PMID:11023861]